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Impact of Early Antiretroviral Treatment Initiation on Performance of Cross-Sectional Incidence Assays

AIDS Res Hum Retroviruses, 2020; 36(7): 583-589. 10.1089/AID.2019.0286
Lamers SL, Rose R, Cross S, Rodriguez CW, Redd AD, Quinn TC, Serwadda D, Kagaayi J, Kigozi G, Galiwango R, Gray RH, Grabowski MK, Laeyendecker O

HIV-1 Subtype Distribution and Diversity Over 18 Years in Rakai, Uganda

AIDS Res Hum Retroviruses, 2020; 36(6): 522-526. 10.1089/aid.2020.0062
Klein SL, Pekosz A, Park HS, Ursin RL, Shapiro JR, Benner SE, Littlefield K, Kumar S, Naik HM, Betenbaugh M, Shrestha R, Wu AA, Hughes RM, Burgess I, Caturegli P, Laeyendecker O, Quinn TC, Sullivan DJ, Shoham S, Redd AD, Bloch EM, Casadevall A, Tobian AAR

Sex, age, and hospitalization drive antibody responses in a COVID-19 convalescent plasma donor population

J Clin Invest, 2020; : . 10.1172/JCI142004
Rose R, Cross S, Lamers SL, Astemborski J, Kirk GD, Mehta SH, Sievers M, Martens C, Bruno D, Redd AD, Laeyendecker O.

Persistence of HIV transmission clusters among people who inject drugs

AIDS, 2020; : . 10.1097/QAD.0000000000002662
Mwinnyaa G, Grabowski MK, Gray RH, Wawer M, Chang LW, Ssekasanvu J, Kagaayi J, Kigozi G, Kalibbala S, Galiwango RM, Ndyanabo A, Serwadda D, Quinn TC, Reynolds SJ, Laeyendecker O

HIV serologically indeterminate individuals: Future HIV status and risk factors

PLoS One, 2020; 15(8): e0237633. 10.1371/journal.pone.0237633
Benner SE, Patel EU, Laeyendecker O, Pekosz A, Littlefield K, Eby Y, Fernandez RE, Miller J, Kirby CS, Keruly M, Klock E, Baker OR, Schmidt HA, Shrestha R, Burgess I, Bonny TS, Clarke W, Caturegli P, Sullivan D, Shoham S, Quinn TC, Bloch EM, Casadevall A, Tobian AAR, Redd AD

SARS-CoV-2 Antibody Avidity Responses in COVID-19 Patients and Convalescent Plasma Donors

J Infect Dis, 2020; : . 10.1093/infdis/jiaa581
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Healthy donor T-cell responses to common cold coronaviruses and SARS-CoV-2

J Clin Invest, 2020; : . 10.1172/JCI143120
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Viral epitope profiling of COVID-19 patients reveals cross-reactivity and correlates of severity

Science, 2020; : . 10.1126/science.abd4250
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Achieving coordinated national immunity and cholera elimination in Haiti through vaccination: a modelling study

Lancet Glob Health, 2020; 8 (7): e1081–89. 10.1016/S2214-109X(20)30310-7
Zheng Q, Jones FK, Leavitt SV, Ung L, Labrique AB, Peters DH, Lee EC, Azman AS

HIT-COVID, a global database tracking public health interventions to COVID-19

Sci. Data, 2020; 7: 286. 10.1038/s41597-020-00610-2
Grantz KH, Lee EC, McGowan LD, Lee KH, Metcalf CJE, Gurley ES, Lessler J

Maximizing and evaluating the impact of test-trace-isolate programs

MedRxiv, 2020; : . 10.1101/2020.09.02.20186916
Wohl S, Giles JR, Lessler J

Sample Size Calculation for Phylogenetic Case Linkage

MedRxiv, 2020; : . 10.1101/2020.07.10.20150920
Giles JR, zu Erbach-Schoenberg E, Tatem AJ, Gardner L, Bjørnstad ON, Metcalf CJE, Wesolowski A

The duration of travel impacts the spatial dynamics of infectious diseases

Proc Natl Acad Sci U S A, 2020; 117(36): 22572-225. 10.1073/pnas.1922663117
Chowdhury S, Azziz-Baumgartner E, Kile JC, Hoque M, Rahman MZ, Hossain M, Ghosh PK, Ahmed SSU, Kennedy ED, Sturm-Ramirez K, Gurley ES

Association of Biosecurity and Hygiene Practices with Environmental Contamination with Influenza A Viruses in Live Bird Markets, Bangladesh

Emerg Infect Dis, 2020; 26(9): 2087-2096. 10.3201/eid2609.191029
Paul KK, Sazzad HMS, Rahman M, Sultana S, Hossain MJ, Ledermann JP, Burns P, Friedman MS, Flora MS, Fischer M, Hills S, Luby SP, Gurley ES

Hospital-based surveillance for Japanese encephalitis in Bangladesh, 2007–2016: Implications for introduction of immunization

Int J Infect Dis, 2020; 99: 69-74. 10.1016/j.ijid.2020.07.026
Taylor AW, Blau DM, Bassat Q, Onyango D, Kotloff KL, Arifeen SE, Mandomando I, Chawana R, Baillie VL, Akelo V, Tapia MD, Salzberg NT, Keita AM, Morris T, Nair S, Assefa N, Seale AC, Scott JAG, Kaiser R, Jambai A, Barr BAT, Gurley ES, Ordi J, Zaki SR, Sow SO, Islam F, Rahman A, Dowell SF, Koplan JP, Raghunathan PL, Madhi SA, Breiman RF

Initial findings from a novel population-based child mortality surveillance approach: a descriptive study

Lancet Glob Health, 2020; 8 (7): e909-e919. 10.1016/S2214-109X(20)30205-9
Paul KK, Salje H, Rahman MW, Rahman M, Gurley ES

Comparing insights from clinic-based versus community-based outbreak investigations: a case study of chikungunya in Bangladesh

Int J Infect Dis, 2020; 97: 306-312. 10.1016/j.ijid.2020.05.111
Gurley ES, Spiropoulou CF, de Wit E

Twenty Years of Nipah Virus Research: Where Do We Go From Here?

J Infect Dis, 2020; 221: S359–S362. 10.1093/infdis/jiaa078
Nikolay B, Salje H, Khan AKMD, Sazzad HMS, Satter SM, Rahman M, Doan S, Knust B, Flora MS, Luby SP, Cauchemez S, Gurley ES

A Framework to Monitor Changes in Transmission and Epidemiology of Emerging Pathogens: Lessons From Nipah Virus

J Infect Dis, 2020; 221: S363–S369. 10.1093/infdis/jiaa074
Lee KH, Nikolay B, Sazzad HMS, Hossain MJ, Khan AKMD, Rahman M, Satter SM, Nichol ST, Klena JD, Pulliam JRC, Kilpatrick AM, Sultana S, Afroj S, Daszak P, Luby S, Cauchemez S, Salje H, Gurley ES

Changing Contact Patterns Over Disease Progression: Nipah Virus as a Case Study

J Infect Dis, 2020; 222 (3): 438–442. 10.1093/infdis/jiaa091
Olival KJ, Latinne A, Islam A, Epstein JH, Hersch R, Engstrand RC, Gurley ES, Amato G, Luby SP, Daszak P

Population genetics of fruit bat reservoir informs the dynamics, distribution and diversity of Nipah virus

Mol Ecol, 2020; 25 (5): 970-985. 10.1111/mec.15288
Lauer SA, Grantz KH, Bi Q, Jones FK, Zheng Q, Meredith HR, Azman AS, Reich NG, Lessler J

The Incubation Period of Coronavirus Disease 2019 (COVID-19) From Publicly Reported Confirmed Cases: Estimation and Application

Ann Intern Med, 2020; 172 (9): 577-582. 10.7326/M20-0504
Bi Q, Wu Y, Mei S, Ye C, Zou X, Zhang Z, Liu X, Wei L, Truelove SA, Tong Zhang T, Gao W, Cheng C, Tang X, Wu X, Wu Y, Sun B, Huang S, Sun Y, Zhang J, Ma T, Lessler J, Feng T

Epidemiology and transmission of COVID-19 in 391 cases and 1286 of their close contacts in Shenzhen, China: a retrospective cohort study

Lancet Infect Dis, 2020; 20 (8): 911-919. 10.1016/S1473-3099(20)30287-5
Lee EC, Chao DL, Lemaitre JC, Matrajt L, Pasetto D, Perez-Saez J, Finger F, Rinaldo A, Sugimoto JD, Halloran ME, Longini Jr IM, Ternier R, Vissieres K, Azman AS, Lessler J, Ivers LC

Achieving coordinated national immunity and cholera elimination in Haiti through vaccination: a modelling study

Lancet Glob Health, 2020; 8 (8): e1081-89. 10.1016/S2214-109X(20)30310-7
Graboswki MK, Lessler J, Bazaale J, Nabukala D, Nakinga J, Nantume B, Ssekasanvu J, Raynolds SJ, Ssekubugu R, Nalugoda F, Kigozi G, Kagaayi J, Santelli J, Kennedy C, Wawer MJ, Serwadda D, Chang LW, Gray RH, the Rakai Health Sciences Program

Migration, hotspots, and dispersal of HIV infection in Rakai, Uganda

Nat Commun, 2020; 11(1): 976. 10.1038/s41467-020-14636-y
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HEV study protocol : design of a cluster-randomised, blinded trial to assess the safety, immunogenicity and effectiveness of the hepatitis E vaccine HEV 239 (Hecolin) in women of childbearing age in rural Bangladesh

BMJ Open, 2020; 10(1): e033702. 10.1136/bmjopen-2019-033702
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Hunting Bats for Human Consumption in Bangladesh

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Paul RC, Nazneen A, Banik KC, Sumon SA, Paul KK, Akram A, Uzzaman MS, Iqbal T, Tejada-Strop A, Kamili S, Luby SP, Gidding HF, Hayen A, Gurley ES

Hepatitis E as a cause of adult hospitalization in Bangladesh: Results from an acute jaundice surveillance study in six tertiary hospitals, 2014-2017

PLoS Negl Trop Dis, 2020; 14(1): e0007586. 10.1371/journal.pntd.0007586
Capoferri AA, Lamers S, Grabowski M, Rose RR, Wawer M, Serwadda D, Gray R, Quinn TC, Kigozi G, Kagaayi J, Laeyendecker O

Recombination analysis of near full-length HIV-1 sequences and the identification of a potential new Circulating Recombinant Form from Rakai, Uganda

AIDS Res Hum Retroviruses, 2020; : . 10.1089/AID.2019.0150
Zhang Y, Wymant C, Laeyendecker O, Grabowski MK, Hall M, Hudelson S, Piwowar-Manning E, McCauley M, Gamble T, Hosseinipour MC, Kumarasamy N, Hakim JG, Kumwenda J, Mills LA, Santos BR, Grinsztejn B, Pilotto JH, Chariyalertsak S, Makhema J, Chen YQ, Cohen MS, Fraser C, Eshleman SH.

Evaluation of phylogenetic methods for inferring the direction of HIV transmission: HPTN 052

Clin Infect Dis, 2020; : . 10.1093/cid/ciz1247
Wallace M, Sharfstein J, Lessler J

Performance and Priorities: A Cross-sectional Study of Local Health Department Approaches to Essential Public Health Services

Public Health Rep, 2020; 135(1): 97-106. 10.1177/0033354919890862
Ratmann O, Kagaayi J, Hall M, Golubchick T, Kigozi G, Xi X, Wymant C, Nakigozi G, Abeler-Dörner L, Bonsall D, Gall A, Hoppe A, Kellam P, Bazaale J, Kalibbala S, Laeyendecker O, Lessler J, Nalugoda F, Chang LW, de Oliveira T, Pillay D, Quinn TC, Reynolds SJ, Spencer SEF, Ssekubugu R, Serwadda D, Wawer MJ, Gray RH, Fraser C, Grabowski MK; Rakai Health Sciences Program and the Pangea HIV Consortium.

Quantifying HIV transmission flow between high-prevalence hotspots and surrounding communities: a population-based study in Rakai, Uganda.

Lancet HIV, 2020; : . 10.1016/S2352-3018(19)30378-9
Isanaka S, Grantz KH, Berthé F, Schaefe M, Adehossi E, Grais RF

Routine amoxicillin in the treatment of uncomplicated severe acute malnutrition: extended follow-up from a randomized trial in Niger

JAMA Pediatrics, 2019; 174(3): 295-297. 10.1001/jamapediatrics.2019.5189
Grantz KH, Claudot P, Kambala M, Kouyaté M, Soumah A, Boum Y, Juan-Giner A, Jemmy JP, Cummings DAT, Grais RF

Factors influencing participation in an Ebola vaccine trial among healthcare and front-line workers in Guinea

Vaccine, 2019; 37(48): 7165-7170. 10.1016/j.vaccine.2019.09.094
Hegde ST, Benoit SR, Arvelo W, Lindblade K, López B, McCracken JP, Bernart C, Roldan A, Bryan JP

Burden of laboratory-confirmed shigellosis infections in Guatemala 2007-2012: results from a population-based surveillance system

BMC Public Health, 2019; 19(Suppl 3): 474. 10.1186/s12889-019-6780-7
Haw DJ, Cummings DAT, Lessler J, Salje H, Read JM, Riley S

Differential mobility and local varation in attack rate

PLoS Comput Biol, 2019; 15(1): e1006600. 10.1371/journal.pcbi.1006600
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Depression and incident HIV in adolescent girls and young women in HPTN 068: Targets for prevention and mediating factors

Am J Epidemiol, 2019; : . 10.1093/aje/kwz238
Radonovich LJ Jr, Simberkoff MS, Bessesen MT, Brown AC, Cummings DAT, Gaydos CA, Los JG, Krosche AE, Gibert CL, Gorse GJ, Nyquist AC, Reich NG, Rodriguez-Barradas MC, Price CS, Perl TM; ResPECT investigators((including Lessler J).

N95 Respirators vs Medical Masks for Preventing Influenza Among Health Care Personnel: A Randomized Clinical Trial

JAMA, 2019; 322(9): 824-833. 10.1001/jama.2019.11645
Johansson MA, Apfeldorf KM, Dobson S, Devita J, Buczak AL, Baugher B, Moniz LJ, Bagley T, Babin SM, Guven E, Yamana TK, Shaman J, Moschou T, Lothian N, Lane A, Osborne G, Jiang G, Brooks LC, Farrow DC, Hyun S, Tibshirani RJ, Rosenfeld R, Lessler J, Reich NG, Cummings DAT, Lauer SA, Moore SM, Clapham HE, Lowe R, Bailey TC, García-Díez M, Carvalho MS, Rodó X, Sardar T, Paul R, Ray EL, Sakrejda K, Brown AC, Meng X, Osoba O, Vardavas R, Manheim D, Moore M, Rao DM, Porco TC, Ackley S, Liu F, Worden L, Convertino M, Liu Y, Reddy A, Ortiz E, Rivero J, Brito H, Juarrero A, Johnson LR, Gramacy RB, Cohen JM, Mordecai EA, Murdock CC, Rohr JR, Ryan SJ,, Stewart-Ibarra AM, Weikel DP, Jutla A, Khan R, Poultney M, Colwell RR, Rivera-García B, , Bell JE, Biggerstaff M, Swerdlow D, Mier-Y-Teran-Romero L, Forshey BM, Trtanj J, Asher J, Clay M, Margolis HS, Hebbeler AM, George D, Chretien JP

An open challenge to advance probabilistic forecasting for dengue epidemics

Proc Natl Acad Sci U S A, 2019; 116(48): 24268-2427. 10.1073/pnas.1909865116
Bi Q, Goodman KE, Kaminsky J, Lessler J

What is Machine Learning? A Primer for the Epidemiologist

Am J Epidemiol, 2019; : . 10.1093/aje/kwz189

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