People, Projects and Publications working on Pathogen Genomics
Hepatitis E in Bangladesh
We aim to better understand the epidemiology of Hepatitis E with clinical, serologic, genomic, and human behavior data.
Multi-Pathogen Scenario Modeling and Forecasting
Integrating multiple models for short-term forecasts and longer-term scenario projections of multiple pathogens.
This work aims to understand the utility of malaria parasite genomics to understand patterns of connectivity and transmission particularly in Sub-Saharan Africa.
HCV/HIV Modeling in People Who Inject Drugs (PWID)
Through this project, we aim to characterize PWID networks in the Baltimore Metropolitan Area to identify risk factors for HIV and HCV transmission in this population and understand how interventions and behavioral changes might impact transmission.
Detection of Leptospira species in bat cadavers, Czech and Slovak Republics
Seidlova V, et al.
Emerg Microbes Infect
First detection of Bartonella spp. in bat bugs Cimex pipistrelli (Hemiptera: Cimicidae), Central Europe
Kejíková R, et al.
Global landscape of SARS-CoV-2 genomic surveillance and data sharing
Chen Z, et al.
Phylogenetic estimation of the viral fitness landscape of HIV-1 set-point viral load
Zhao L, et al.
Global landscape of SARS-CoV-2 genomic surveillance, public availability extent of genomic data, and epidemic shaped by variants
Yu H, et al.
Epidemiology of Plasmodium falciparum Infections in a Semi-Arid Rural African Setting: Evidence from Reactive Case Detection in Northwestern Kenya
Meredith HR, et al.
Am J Trop Med Hyg
Genotyping cognate Plasmodium falciparum in humans and mosquitoes to estimate onward transmission of asymptomatic infections
Sumner KM, et al.
Cytokine and Chemokine Levels in Coronavirus Disease 2019 Convalescent Plasma
Bonny TS, et al.
Open Forum Infect Dis
Bartonella species in medically important mosquitoes, Central Europe
Rudolf I, et al.
HIV-1 Subtype Distribution and Diversity Over 18 Years in Rakai, Uganda
Lamers SL, et al.
AIDS Res Hum Retroviruses
A Framework to Monitor Changes in Transmission and Epidemiology of Emerging Pathogens: Lessons From Nipah Virus
Nikolay B, et al.
J Infect Dis
Mapping imported malaria in Bangladesh using parasite genetic and human mobility data
Chang HH, et al.
Using parasite genetic and human mobility data to infer local and cross-border malaria connectivity in Southern Africa
Tessema S, et al.
Validation of the Limiting Antigen Avidity Assay to Estimate Level and Trends in HIV Incidence in an A/D Epidemic in Rakai, Uganda
Laeyendecker O, et al.
AIDS Res Hum Retroviruses
Inferring HIV-1 transmission networks and sources of epidemic spread in Africa with deep-sequence phylogenetic analysis
Ratmann O, et al.
Genomic insights into the 2016-2017 cholera epidemic in Yemen
Weill FX, et al.
Ethical considerations in global HIV phylogenetic research
Coltart CEM, et al.
Mapping malaria by combining parasite genomic and epidemiologic data
Wesolowski A, et al.
Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver
Wymant C, et al.
Enhanced use of phylogenetic data to inform public health approaches to HIV among men who have sex with men