Tobian AA, Grabowski MK, Kigozi G, Redd AD, Eaton KP, Serwadda D, Cornish TC, Nalugoda F, Watya S, Buwembo D, Nkale J, Wawer MJ, Quinn TC, Gray RH.

Human papillomavirus clearance among males is associated with HIV acquisition and increased dendritic cell density in the foreskin.

J Infect Dis, 2013; 207: 1713-22. 10.1093/infdis/jit035
Davis MA, Gray RH, Grabowski MK, Serwadda D, Kigozi G, Gravitt PE, Nalugoda F, Watya S, Wawer MJ, Quinn TC, Tobian AA.

Male circumcision decreases high-risk human papillomavirus viral load in female partners: a randomized trial in Rakai, Uganda.

Int J Cancer, 2013; 133: 1247-52. 10.1002/ijc.28100
Sun AY, Pai M, Salje H, Satyanarayana S, Deo S, Dowdy DW.

Modeling the impact of alternative strategies for rapid molecular diagnosis of tuberculosis in Southeast Asia.

Am J Epidemiol, 2013; 178: 1740-9. 10.1093/aje/kwt210
Dowdy DW, Lotia I, Azman AS, Creswell J, Sahu S, Khan AJ.

Population-level impact of active tuberculosis case finding in an Asian megacity.

PLoS One, 2013; 8: e77517. 10.1371/journal.pone.0077517
Mullis CE, Munshaw S, Grabowski MK, Eshleman SH, Serwadda D, Brookmeyer R, Nalugoda F, Kigozi G, Kagaayi J, Tobian AA, Wawer M, Gray RH, Quinn TC, Laeyendecker O.

Differential specificity of HIV incidence assays in HIV subtypes A and D-infected individuals from Rakai, Uganda.

AIDS Res Hum Retroviruses, 2013; 29: 1146-50. 10.1089/AID.2012.0105
Gurley ES, Salje H, Homaira N, Ram PK, Haque R, Petri WA Jr, Bresee J, Moss WJ, Luby SP, Breysse P, Azziz-Baumgartner E.

Seasonal concentrations and determinants of indoor particulate matter in a low-income community in Dhaka, Bangladesh.

Environ Res, 2013; 121: 11-6. 10.1016/j.envres.2012.10.004
Gurley ES, Homaira N, Salje H, Ram PK, Haque R, Petri W, Bresee J, Moss WJ, Breysse P, Luby SP, Azziz-Baumgartner E.

Indoor exposure to particulate matter and the incidence of acute lower respiratory infections among children: a birth cohort study in urban Bangladesh.

Indoor Air, 2013; 23: 379-86. 10.1111/ina.12038
Kamuliwo M, Chanda E, Haque U, Mwanza-Ingwe M, Sikaala C, Katebe-Sakala C, Mukonka VM, Norris DE, Smith DL, Glass GE, Moss WJ.

The changing burden of malaria and association with vector control interventions in Zambia using district-level surveillance data, 2006-2011.

Malar J, 2013; 12: 437. 10.1186/1475-2875-12-437
McFall AM, Dowdy DW, Zelaya CE, Murphy K, Wilson TE, Young MA, Gandhi M, Cohen MH, Golub ET, Althoff KN; Women's Interagency HIV Study.

Understanding the disparity: predictors of virologic failure in women using highly active antiretroviral therapy vary by race and/or ethnicity.

J Acquir Immune Defic Syndr, 2013; 64: 289-98. 10.1097/QAI.0b013e3182a095e9
Azman AS, Rudolph KE, Cummings DA, Lessler J.

The incubation period of cholera: a systematic review.

J Infect, 2013; 66: 432-8. 10.1016/j.jinf.2012.11.013
Reiner RC Jr, Perkins TA, Barker CM, Niu T, Chaves LF, Ellis AM, George DB, Le Menach A, Pulliam JR, Bisanzio D, Buckee C, Chiyaka C, Cummings DA, Garcia AJ, Gatton ML, Gething PW, Hartley DM, Johnston G, Klein EY, Michael E, Lindsay SW, Lloyd AL, et al.

A systematic review of mathematical models of mosquito-borne pathogen transmission: 1970-2010.

J R Soc Interface, 2013; 10: 20120921. 10.1098/rsif.2012.0921
Mier-y-Teran-Romero L, Schwartz IB, Cummings DA.

Breaking the symmetry: immune enhancement increases persistence of dengue viruses in the presence of asymmetric transmission rates.

J Theor Biol, 2013; 332: 203-10. 10.1016/j.jtbi.2013.04.036
Meltzer AC, Pierce R, Cummings DA, Pines JM, May L, Smith MA, Marcotte J, McCarthy ML.

Rapid 13C Urea Breath Test to Identify Helicobacter pylori Infection in Emergency Department Patients with Upper Abdominal Pain.

West J Emerg Med, 2013; 14: 278-82. 10.5811/westjem.2012.12.15173
Blackwood JC, Cummings DA, Broutin H, Iamsirithaworn S, Rohani P.

Deciphering the impacts of vaccination and immunity on pertussis epidemiology in Thailand.

Proc Natl Acad Sci U S A, 2013; 110: 9595-600. 10.1073/pnas.1220908110
Assiri A, McGeer A, Perl TM, Price CS, Al Rabeeah AA, Cummings DA, Alabdullatif ZN, Assad M, Almulhim A, Makhdoom H, Madani H, Alhakeem R, Al-Tawfiq JA, Cotten M, Watson SJ, Kellam P, Zumla AI, Memish ZA; KSA MERS-CoV Investigation Team.

Hospital outbreak of Middle East respiratory syndrome coronavirus.

N Engl J Med, 2013; 369: 407-16. 10.1056/NEJMoa1306742
Reich NG, Shrestha S, King AA, Rohani P, Lessler J, Kalayanarooj S, Yoon IK, Gibbons RV, Burke DS, Cummings DA.

Interactions between serotypes of dengue highlight epidemiological impact of cross-immunity.

J R Soc Interface, 2013; 10: 20130414. 10.1098/rsif.2013.0414
Liu SH, Brotman RM, Zenilman JM, Gravitt PE, Cummings DA.

Menstrual cycle and detectable human papillomavirus in reproductive-age women: a time series study.

J Infect Dis, 2013; 208: 1404-15. 10.1093/infdis/jit337
Rodriguez-Barraquer I, Mier-y-Teran-Romero L, Burke DS, Cummings DA.

Challenges in the interpretation of dengue vaccine trial results.

PLoS Negl Trop Dis, 2013; 7: e2126. 10.1371/journal.pntd.0002126
Lee RM, Lessler J, Lee RA, Rudolph KE, Reich NG, Perl TM, Cummings DA.

Incubation periods of viral gastroenteritis: a systematic review.

BMC Infect Dis, 2013; 13: 446. 10.1186/1471-2334-13-446
Word DP, Young JK, Cummings DA, Iamsirithaworn S, Laird CD.

Interior-point methods for estimating seasonal parameters in discrete-time infectious disease models.

PLoS One, 2013; 8: e74208. 10.1371/journal.pone.0074208
Azman AS, Stark JH, Althouse BM, Vukotich CJ Jr, Stebbins S, Burke DS, Cummings DA.

Household transmission of influenza A and B in a school-based study of non-pharmaceutical interventions.

Epidemics, 2013; 5: 181-6. 10.1016/j.epidem.2013.09.001
van Panhuis WG, Grefenstette J, Jung SY, Chok NS, Cross A, Eng H, Lee BY, Zadorozhny V, Brown S, Cummings D, Burke DS.

Contagious diseases in the United States from 1888 to the present.

N Engl J Med, 2013; 369: 2152-8. 10.1056/NEJMms1215400
Laeyendecker O, Brookmeyer R, Oliver AE, Mullis CE, Eaton KP, Mueller AC, Jacobson LP, Margolick JB, Brown J, Rinaldo CR, Quinn TC, Eshleman SH; Multicenter Aids Cohort Study Macs.

Factors associated with incorrect identification of recent HIV infection using the BED capture immunoassay.

AIDS Res Hum Retroviruses, 2012; 28(8): 816-22. 10.1089/AID.2011.0258
Keating SM1, Hanson D, Lebedeva M, Laeyendecker O, Ali-Napo NL, Owen SM, Stramer SL, Moore RD, Norris PJ, Busch MP.

Lower-sensitivity and avidity modifications of the vitros anti-HIV 1+2 assay for detection of recent HIV infections and incidence estimation.

J Clin Microbiol, 2012; 50(12): 3968-76. 10.1128/JCM.01454-12
Ng OT, Eyzaguirre LM, Carr JK, Chew KK, Lin L, Chua A, Leo YS, Redd AD, Quinn TC, Laeyendecker O.

Identification of new CRF51_01B in Singapore using full genome analysis of three HIV type 1 isolates.

AIDS Res Hum Retroviruses, 2012; 28(5): 527-30. 10.1089/AID.2011.0177
Metcalf CJ, Lessler J, Klepac P, Cutts F, Grenfell BT.

Impact of birth rate, seasonality and transmission rate on minimum levels of coverage needed for rubella vaccination.

Epidemiol Infect, 2012; 140: 2290-301. 10.1017/S0950268812000131
Read JM, Edmunds WJ, Riley S, Lessler J, Cummings DA.

Close encounters of the infectious kind: methods to measure social mixing behaviour.

Epidemiol Infect, 2012; 140: 2117-30. 10.1017/S0950268812000842
Cutts FT, Metcalf CJ, Lessler J, Grenfell BT.

Rubella vaccination: must not be business as usual.

Lancet, 2012; 380: 217-8. 10.1016/S0140-6736(12)61215-X
Lessler J, Metcalf CJ, Grenfell BT.

Measurement of vaccine-derived immunity: how do we use all the data?

Expert Rev Vaccines, 2012; 11: 747-9. 10.1586/erv.12.47
Edlund S, Davis M, Douglas JV, Kershenbaum A, Waraporn N, Lessler J, Kaufman JH.

A global model of malaria climate sensitivity: comparing malaria response to historic climate data based on simulation and officially reported malaria incidence.

Malar J, 2012; 11: 331. 10.1186/1475-2875-11-331
Azman AS, Luquero FJ, Rodrigues A, Palma PP, Grais RF, Banga CN, Grenfell BT, Lessler J.

Urban cholera transmission hotspots and their implications for reactive vaccination: evidence from Bissau city, Guinea bissau.

PLoS Negl Trop Dis, 2012; 6: e1901. 10.1371/journal.pntd.0001901
Redd AD, Mullis CE, Serwadda D, Kong X, Martens C, Ricklefs SM, Tobian AA, Xiao C, Grabowski MK, Nalugoda F, Kigozi G, Laeyendecker O, Kagaayi J, Sewankambo N, Gray RH, Porcella SF, Wawer MJ, Quinn TC.

The rates of HIV superinfection and primary HIV incidence in a general population in Rakai, Uganda.

J Infect Dis, 2012; 206: 267-74. 10.1093/infdis/jis325
Redd AD, Collinson-Streng AN, Chatziandreou N, Mullis CE, Laeyendecker O, Martens C, Ricklefs S, Kiwanuka N, Nyein PH, Lutalo T, Grabowski MK, Kong X, Manucci J, Sewankambo N, Wawer MJ, Gray RH, Porcella SF, Fauci AS, Sagar M, Serwadda D, Quinn TC.

Previously transmitted HIV-1 strains are preferentially selected during subsequent sexual transmissions.

J Infect Dis, 2012; 206: 1433-42. 10.1093/infdis/jis503
Reich NG, Lessler J, Cummings DA, Brookmeyer R.

Estimating absolute and relative case fatality ratios from infectious disease surveillance data.

Biometrics, 2012; 68: 598-606. 10.1111/j.1541-0420.2011.01709.x
Word DP, Cummings DA, Burke DS, Iamsirithaworn S, Laird CD.

A nonlinear programming approach for estimation of transmission parameters in childhood infectious disease using a continuous time model.

J R Soc Interface, 2012; 9: 1983-97. 10.1098/rsif.2011.0829
Stark JH, Sharma R, Ostroff S, Cummings DA, Ermentrout B, Stebbins S, Burke DS, Wisniewski SR.

Local spatial and temporal processes of influenza in Pennsylvania, USA: 2003-2009.

PLoS One, 2012; 7: e34245. 10.1371/journal.pone.0034245
WHO-VMI Dengue Vaccine Modeling Group, Beatty M, Boni MF, Brown S, Buathong R, Burke D, Coudeville L, Cummings DA, Edelman R, Farrar J, Focks DA, Gomes MG, Guignard A, Halstead S, Hombach J, Knerer G, Koelle K, Lam FC, Lang J, Longini I, Medlock J, Namgyal P, et al.

Assessing the potential of a candidate dengue vaccine with mathematical modeling.

PLoS Negl Trop Dis, 2012; 6: e1450. 10.1371/journal.pntd.0001450
Salje H, Lessler J, Endy TP, Curriero FC, Gibbons RV, Nisalak A, Nimmannitya S, Kalayanarooj S, Jarman RG, Thomas SJ, Burke DS, Cummings DA.

Revealing the microscale spatial signature of dengue transmission and immunity in an urban population.

Proc Natl Acad Sci U S A, 2012; 109: 9535-8. 10.1073/pnas.1120621109
Burton J, Billings L, Cummings DA, Schwartz IB.

Disease persistence in epidemiological models: the interplay between vaccination and migration.

Math Biosci, 2012; 239: 91-6. 10.1016/j.mbs.2012.05.003
Lessler J, Riley S, Read JM, Wang S, Zhu H, Smith GJ, Guan Y, Jiang CQ, Cummings DA.

Evidence for antigenic seniority in influenza A H3N2 antibody responses in southern China.

PLoS Pathog, 2012; 8: e1002802. 10.1371/journal.ppat.1002802