Redd AD, Mullis CE, Serwadda D, Kong X, Martens C, Ricklefs SM, Tobian AA, Xiao C, Grabowski MK, Nalugoda F, Kigozi G, Laeyendecker O, Kagaayi J, Sewankambo N, Gray RH, Porcella SF, Wawer MJ, Quinn TC.

The rates of HIV superinfection and primary HIV incidence in a general population in Rakai, Uganda.

J Infect Dis, 2012; 206: 267-74. 10.1093/infdis/jis325
Redd AD, Collinson-Streng AN, Chatziandreou N, Mullis CE, Laeyendecker O, Martens C, Ricklefs S, Kiwanuka N, Nyein PH, Lutalo T, Grabowski MK, Kong X, Manucci J, Sewankambo N, Wawer MJ, Gray RH, Porcella SF, Fauci AS, Sagar M, Serwadda D, Quinn TC.

Previously transmitted HIV-1 strains are preferentially selected during subsequent sexual transmissions.

J Infect Dis, 2012; 206: 1433-42. 10.1093/infdis/jis503
Reich NG, Lessler J, Cummings DA, Brookmeyer R.

Estimating absolute and relative case fatality ratios from infectious disease surveillance data.

Biometrics, 2012; 68: 598-606. 10.1111/j.1541-0420.2011.01709.x
Word DP, Cummings DA, Burke DS, Iamsirithaworn S, Laird CD.

A nonlinear programming approach for estimation of transmission parameters in childhood infectious disease using a continuous time model.

J R Soc Interface, 2012; 9: 1983-97. 10.1098/rsif.2011.0829
Stark JH, Sharma R, Ostroff S, Cummings DA, Ermentrout B, Stebbins S, Burke DS, Wisniewski SR.

Local spatial and temporal processes of influenza in Pennsylvania, USA: 2003-2009.

PLoS One, 2012; 7: e34245. 10.1371/journal.pone.0034245
WHO-VMI Dengue Vaccine Modeling Group, Beatty M, Boni MF, Brown S, Buathong R, Burke D, Coudeville L, Cummings DA, Edelman R, Farrar J, Focks DA, Gomes MG, Guignard A, Halstead S, Hombach J, Knerer G, Koelle K, Lam FC, Lang J, Longini I, Medlock J, Namgyal P, et al.

Assessing the potential of a candidate dengue vaccine with mathematical modeling.

PLoS Negl Trop Dis, 2012; 6: e1450. 10.1371/journal.pntd.0001450
Salje H, Lessler J, Endy TP, Curriero FC, Gibbons RV, Nisalak A, Nimmannitya S, Kalayanarooj S, Jarman RG, Thomas SJ, Burke DS, Cummings DA.

Revealing the microscale spatial signature of dengue transmission and immunity in an urban population.

Proc Natl Acad Sci U S A, 2012; 109: 9535-8. 10.1073/pnas.1120621109
Burton J, Billings L, Cummings DA, Schwartz IB.

Disease persistence in epidemiological models: the interplay between vaccination and migration.

Math Biosci, 2012; 239: 91-6. 10.1016/j.mbs.2012.05.003
Lessler J, Riley S, Read JM, Wang S, Zhu H, Smith GJ, Guan Y, Jiang CQ, Cummings DA.

Evidence for antigenic seniority in influenza A H3N2 antibody responses in southern China.

PLoS Pathog, 2012; 8: e1002802. 10.1371/journal.ppat.1002802
Stark JH, Cummings DA, Ermentrout B, Ostroff S, Sharma R, Stebbins S, Burke DS, Wisniewski SR.

Local variations in spatial synchrony of influenza epidemics.

PLoS One, 2012; 7: e43528. 10.1371/journal.pone.0043528
Rainwater-Lovett K, Rodriguez-Barraquer I, Cummings DA, Lessler J.

Variation in dengue virus plaque reduction neutralization testing: systematic review and pooled analysis.

BMC Infect Dis, 2012; 12: 233. 10.1186/1471-2334-12-233
Althouse BM, Lessler J, Sall AA, Diallo M, Hanley KA, Watts DM, Weaver SC, Cummings DA.

Synchrony of sylvatic dengue isolations: a multi-host, multi-vector SIR model of dengue virus transmission in Senegal.

PLoS Negl Trop Dis, 2012; 6: e1928. 10.1371/journal.pntd.0001928
Taha TE, James MM, Hoover DR, Sun J, Laeyendecker O, Mullis CE, Kumwenda JJ, Lingappa JR, Auvert B, Morrison CS, Mofensen LM, Taylor A, Fowler MG, Kumenda NI, Eshleman SH.

Association of recent HIV infection and in-utero HIV-1 transmission.

AIDS, 2011; 25(11): 1357-64. 10.1097/QAD.0b013e3283489d45
Incidence Assay Critical Path Working Group.

More and better information to tackle HIV epidemics: towards improved HIV incidence assays.

PLoS Med, 2011; 8(6): 1001045. 10.1371/journal.pmed.1001045
Piwowar-Manning E, Fiamma A, Laeyendecker O, Kulich M, Donnell D, Szekeres G, Robins-Morris L, Mullis CE, Vallari A, Hackett J Jr, Mastro TD, Gray G, Richter L, Alexandre MW, Chariyalertsak S, Chingono A, Sweat M, Coates T, Eshleman SH.

HIV surveillance in a large, community-based study: results from the pilot study of Project Accept (HIV Prevention Trials Network 043).

BMC Infect Dis, 2011; 11: 251. 10.1186/1471-2334-11-251
Laeyendecker O, Latimore A, Eshleman SH, Summerton J, Oliver AE, Gamiel J, Dobbs T, Mei J, Murphy G, Parry JV, Owen SM, Quinn TC.

The effect of sample handling on cross sectional HIV incidence testing results.

PLoS One, 2011; 6(10): e25899. 10.1371/journal.pone.0025899
Cousins MM, Laeyendecker O, Beauchamp G, Brookmeyer R, Towler WI, Hudelson SE, Khaki L, Koblin B, Chesney M, Moore RD, Kelen GD, Coates T, Celum C, Buchbinder SP, Seage GR 3rd, Quinn TC, Donnell D, Eshleman SH.

Use of a high resolution melting (HRM) assay to compare gag, pol, and env diversity in adults with different stages of HIV infection.

PLoS One, 2011; 6(11): e27211. 10.1371/journal.pone.0027211
Ng OT, Munshaw S, Lamers SL, Chew KK, Lin L, Redd AD, Manucci J, Quinn TC, Ray SC, Chua A, Leo YS, Laeyendecker O.

Molecular epidemiology of HIV type 1 in Singapore and identification of novel CRF01_AE/B recombinant forms.

AIDS Res Hum Retroviruses, 2011; (10): 1135-7. 10.1089/AID.2010.0364
Ng OT, Lin L, Laeyendecker O, Quinn TC, Sun YJ, Lee CC, Leo YS.

Increased rate of CD4+ T-cell decline and faster time to antiretroviral therapy in HIV-1 subtype CRF01_AE infected seroconverters in Singapore.

PLoS One, 2011; 6(1): e15738. 10.1371/journal.pone.0015738
Shirreff G, Pellis L, Laeyendecker O, Fraser C.

Transmission selects for HIV-1 strains of intermediate virulence: a modelling approach.

PLoS Comput Biol, 2011; 7(10): e1002185. 10.1371/journal.pcbi.1002185
Lee BK, Lessler J, Stuart EA.

Weight trimming and propensity score weighting.

PLoS One, 2011; 6: e18174. 10.1371/journal.pone.0018174
Kucirka LM, Grams ME, Lessler J, Hall EC, James N, Massie AB, Montgomery RA, Segev DL.

Association of race and age with survival among patients undergoing dialysis.

JAMA, 2011; 306: 620-6. 10.1001/jama.2011.1127
Edlund S, Kaufman J, Lessler J, Douglas J, Bromberg M, Kaufman Z, Bassal R, Chodick G, Marom R, Shalev V, Mesika Y, Ram R, Leventhal A.

Comparing three basic models for seasonal influenza.

Epidemics, 2011; 3: 135-42. 10.1016/j.epidem.2011.04.002
Sonthichai C, Iamsirithaworn S, Cummings D, Shokekird P, Niramitsantipong A, Khumket S, Chittaganpitch M, Lessler J.

Effectiveness of Non-pharmaceutical Interventions in Controlling an Influenza A Outbreak in a School, Thailand, November 2007.

Outbreak Surveill Investig Rep, 2011; 4: 611..
Rainwater-Lovett K, Moss WJ.

Immunologic basis for revaccination of HIV-infected children receiving HAART.

Future Virol, 2011; 6: 59-71.. 10.2217/fvl.10.75
Reich NG, Lessler J, Chu H, Cole SR.

Identification of the asymptomatic ratio.

Epidemiology, 2011; 22: 333-5. 10.1097/EDE.0b013e31821092b1
Lessler J, Moss WJ, Lowther SA, Cummings DA.

Maintaining high rates of measles immunization in Africa.

Epidemiol Infect, 2011; 139: 1039-49. 10.1017/S0950268810002232
Rodriguez-Barraquer I, Cordeiro MT, Braga C, de Souza WV, Marques ET, Cummings DA.

From re-emergence to hyperendemicity: the natural history of the dengue epidemic in Brazil.

PLoS Negl Trop Dis, 2011; 5: e935. 10.1371/journal.pntd.0000935
Stebbins S, Stark JH, Prasad R, Thompson WW, Mitruka K, Rinaldo C, Vukotich CJ Jr, Cummings DA.

Sensitivity and specificity of rapid influenza testing of children in a community setting.

Influenza Other Respir Viruses, 2011; 5: 104-9. 10.1111/j.1750-2659.2010.00171.x
Lee BY, Connor DL, Kitchen SB, Bacon KM, Shah M, Brown ST, Bailey RR, Laosiritaworn Y, Burke DS, Cummings DA.

Economic value of dengue vaccine in Thailand.

Am J Trop Med Hyg, 2011; 84: 764-72. 10.4269/ajtmh.2011.10-0624
Reich NG, Perl TM, Cummings DA, Lessler J.

Visualizing clinical evidence: citation networks for the incubation periods of respiratory viral infections.

PLoS One, 2011; 6: e19496. 10.1371/journal.pone.0019496
Stebbins S, Cummings DA, Stark JH, Vukotich C, Mitruka K, Thompson W, Rinaldo C, Roth L, Wagner M, Wisniewski SR, Dato V, Eng H, Burke DS.

Reduction in the incidence of influenza A but not influenza B associated with use of hand sanitizer and cough hygiene in schools: a randomized controlled trial.

Pediatr Infect Dis J, 2011; 30: 921-6. 10.1097/INF.0b013e3182218656
Johansson MA, Hombach J, Cummings DA.

Models of the impact of dengue vaccines: a review of current research and potential approaches.

Vaccine, 2011; 29: 5860-8. 10.1016/j.vaccine.2011.06.042
Fraser C, Cummings DA, Klinkenberg D, Burke DS, Ferguson NM.

Influenza transmission in households during the 1918 pandemic.

Am J Epidemiol, 2011; 174: 505-14. 10.1093/aje/kwr122
van Panhuis WG, Luxemburger C, Pengsaa K, Limkittikul K, Sabchareon A, Lang J, Durbin AP, Cummings DA.

Decay and persistence of maternal dengue antibodies among infants in Bangkok.

Am J Trop Med Hyg, 2011; 85: 355-62. 10.4269/ajtmh.2011.11-0125
Lessler J, Cummings DA, Read JM, Wang S, Zhu H, Smith GJ, Guan Y, Jiang CQ, Riley S.

Location-specific patterns of exposure to recent pre-pandemic strains of influenza A in southern China.

Nat Commun, 2011; 2: 423. 10.1038/ncomms1432
Althouse BM, Ng YY, Cummings DA.

Prediction of dengue incidence using search query surveillance.

PLoS Negl Trop Dis, 2011; 5: e1258. 10.1371/journal.pntd.0001258
Lessler J, Metcalf CJ, Grais RF, Luquero FJ, Cummings DA, Grenfell BT.

Measuring the performance of vaccination programs using cross-sectional surveys: a likelihood framework and retrospective analysis.

PLoS Med, 2011; 8: e1001110. 10.1371/journal.pmed.1001110
Kiwanuka N, Robb M, Laeyendecker O, Kigozi G, Wabwire-Mangen F, Makumbi FE, Nalugoda F, Kagaayi J, Eller M, Eller LA, Serwadda D, Sewankambo NK, Reynolds SJ, Quinn TC, Gray RH, Wawer MJ, Whalen CC.

HIV-1 viral subtype differences in the rate of CD4+ T-cell decline among HIV seroincident antiretroviral naive persons in Rakai district, Uganda.

J Acquir Immune Defic Syndr, 2010; 54(2): 180-4. 10.1097/QAI.0b013e3181c98fc0
Hollingsworth TD, Laeyendecker O, Shirreff G, Donnelly CA, Serwadda D, Wawer MJ, Kiwanuka N, Nalugoda F, Collinson-Streng A, Ssempijja V, Hanage WP, Quinn TC, Gray RH, Fraser C

HIV-1 transmitting couples have similar viral load set-points in Rakai, Uganda.

PLoS Pathog, 2010; 6(5): e1000876. 10.1371/journal.ppat.1000876

Pages