Publications

Longosz AF, Serwadda D, Nalugoda F, Kigozi G, Franco V, Gray RH, Quinn TC, Eshleman SH, Laeyendecker O.

Impact of HIV subtype on performance of the limiting antigen-avidity enzyme immunoassay, the bio-rad avidity assay, and the BED capture immunoassay in Rakai, Uganda.

AIDS Res Hum Retroviruses, 2014; 30(4): 339-44. 10.1089/AID.2013.0169

Cousins MM, Konikoff J, Laeyendecker O, Celum C, Buchbinder SP, Seage GR 3rd, Kirk GD, Moore RD, Mehta SH, Margolick JB, Brown J, Mayer KH, Koblin BA, Wheeler D, Justman JE, Hodder SL, Quinn TC, Brookmeyer R, Eshleman SH.

HIV diversity as a biomarker for HIV incidence estimation: including a high-resolution melting diversity assay in a multiassay algorithm.

J Clin Microbiol, 2014; 52(1): 115-21. 10.1128/JCM.02040-13

Longosz AF, Mehta SH, Kirk GD, Margolick JB, Brown J, Quinn TC, Eshleman SH, Laeyendecker O.

Incorrect identification of recent HIV infection in adults in the United States using a limiting-antigen avidity assay.

AIDS, 2014; 28(8): 1227-32. 10.1097/QAD.0000000000000221.

Longosz AF, Morrison CS, Chen PL, Arts E, Nankya I, Salata RA, Franco V, Quinn TC, Eshleman SH, Laeyendecker O.

Immune responses in Ugandan women infected with subtypes A and D HIV using the BED capture immunoassay and an antibody avidity assay.

J Acquir Immune Defic Syndr, 2014; 65(4): 390-396. 10.1097/QAI.0000000000000006

Cousins MM, Konikoff J, Sabin D, Khaki L, Longosz AF, Laeyendecker O, Celum C, Buchbinder SP, Seage GR, Kirk GD, Moore RD, Mehta SH, Margolick JB, Brown J, Mayer KH, Kobin BA, Wheeler D, Justman JE, Hodder SL, Quinn TC, Brookmeyer R, Eshleman SH.

A comparison of two measures of HIV diversity in multi-assay algorithms for HIV incidence estimation.

PLoS One, 2014; 9(6): e101043. 10.1371/journal.pone.0101043

Coates TJ, Kulich M, Celentano DD, Zelaya CE, Chariyalertsak S, Chingono A, Gray G, Mbwambo JK, Morin SF, Richter L, Sweat M, van Rooyen H, McGrath N, Fiamma A, Laeyendecker O, Piwowar-Manning E, Szekeres G, Donnell D, Eshleman SH; NIMH Project Accept (HPTN 043) study team.

Effect of community-based voluntary counselling and testing on HIV incidence and social and behavioural outcomes (NIMH Project Accept; HPTN 043): a cluster-randomised trial.

Lancet Glob Health, 2014; 2(5): e267-277. 10.1016/S2214-109X(14)70032-4

Huynh D, Laeyendecker O, Brookmeyer R.

A serial risk score approach to disease classification that accounts for accuracy and cost.

Biometrics, 2014; 70(4): 1042-1051. 10.1111/biom.12217

Laeyendecker O, Brookmeyer R.

Response to using incidence assays within the context of the recent infections testing algorithm.

AIDS, 2014; 28(14): 2168. 10.1097/QAD.0000000000000368

Etemad B, Gonzalez OA, White L, Laeyendecker O, Kirk GD, Mehta S, Sagar M.

Characterization of HIV-1 envelopes in acutely and chronically infected injection drug users.

Retrovirology, 2014; 11: 106. 10.1186/s12977-014-0106-8

Ng OT, Laeyendecker O, Redd AD, Munshaw S, Grabowski MK, Paquet AC, Evans MC, Haddad M, Huang W, Robb ML, Reynolds SJ, Gray RH, Wawer MJ, Serwadda D, Eshleman SH, Quinn TC.

HIV type 1 polymerase gene polymorphisms are associated with phenotypic differences in replication capacity and disease progression.

J Infect Dis, 2014; 209(1): 67-73. 10.1093/infdis/jit425.

Kaufman J, Lessler J, Harry A, Edlund S, Hu K, Douglas J, Thoens C, Appel B, Käsbohrer A, Filter M.

A Likelihood-Based Approach to Identifying Contaminated Food Products Using Sales Data: Performance and Challenges.

PLoS Comput Biol, 2014; 10(7): e1003692. 10.1371/journal.pcbi.1003692

Lessler J.

Immunology. Charting the life-course epidemiology of influenza.

Science, 2014; 346: 919-20. 10.1126/science.aaa0613

Grabowski MK, Redd AD.

Molecular tools for studying HIV transmission in sexual networks.

Curr Opin HIV AIDS, 2014; 9: 126-33. 10.1097/COH.0000000000000040

Grabowski MK, Gray RH, Serwadda D, Kigozi G, Gravitt PE, Nalugoda F, Reynolds SJ, Wawer MJ, Watya S, Quinn TC, Tobian AA.

High-risk human papillomavirus viral load and persistence among heterosexual HIV-negative and HIV-positive men.

Sex Transm Infect, 2014; 90: 337-43. 10.1136/sextrans-2013-051230

Tobian AA, Gaydos C, Gray RH, Kigozi G, Serwadda D, Quinn N, Grabowski MK, Musoke R, Ndyanabo A, Nalugoda F, Wawer MJ, Quinn TC.

Male circumcision and Mycoplasma genitalium infection in female partners: a randomised trial in Rakai, Uganda.

Sex Transm Infect, 2014; 90: 150-4. 10.1136/sextrans-2013-051293

Rainwater-Lovett K, Chun K, Lessler J.

Influenza outbreak control practices and the effectiveness of interventions in long-term care facilities: a systematic review.

Influenza Other Respir Viruses, 2014; 8: 74-82. 10.1111/irv.12203

Salje H, Andrews JR, Deo S, Satyanarayana S, Sun AY, Pai M, Dowdy DW.

The importance of implementation strategy in scaling up Xpert MTB/RIF for diagnosis of tuberculosis in the Indian health-care system: a transmission model.

PLoS Med, 2014; 11: e1001674. 10.1371/journal.pmed.1001674

Khan SU, Salje H, Hannan A, Islam MA, Bhuyan AA, Islam MA, Rahman MZ, Nahar N, Hossain MJ, Luby SP, Gurley ES.

Dynamics of Japanese encephalitis virus transmission among pigs in Northwest Bangladesh and the potential impact of pig vaccination.

PLoS Negl Trop Dis, 2014; 8: e3166. 10.1371/journal.pntd.0003166

Rashed SM, Azman AS, Alam M, Li S, Sack DA, Morris JG Jr, Longini I, Siddique AK, Iqbal A, Huq A, Colwell RR, Sack RB, Stine OC.

Genetic variation of Vibrio cholerae during outbreaks, Bangladesh, 2010-2011.

Emerg Infect Dis, 2014; 20: 54-60. 10.3201/eid2001.130796

George CM, Rashid MU, Sack DA, Sack RB, Saif-Ur-Rahman KM, Azman AS, Monira S, Bhuyian SI, Zillur Rahman KM, Toslim Mahmud M, Mustafiz M, Alam M.

Evaluation of enrichment method for the detection of Vibrio cholerae O1 using a rapid dipstick test in Bangladesh.

Trop Med Int Health, 2014; 19: 301-7. 10.1111/tmi.12252

Dowdy DW, Azman AS, Kendall EA, Mathema B.

Transforming the fight against tuberculosis: targeting catalysts of transmission.

Clin Infect Dis, 2014; 59: 1123-9. 10.1093/cid/ciu506

Azman AS, Dowdy DW.

Bold thinking for bold results: modeling the elimination of tuberculosis.

Int J Tuberc Lung Dis, 2014; 18: 883. 10.5588/ijtld.14.0386

Azman AS, Golub JE, Dowdy DW.

How much is tuberculosis screening worth? Estimating the value of active case finding for tuberculosis in South Africa, China, and India.

BMC Med, 2014; 12: 216. 10.1186/s12916-014-0216-0

Velasco JM, Alera MT, Ypil-Cardenas CA, Dimaano EM, Jarman RG, Chinnawirotpisan P, Thaisomboonsuk B, Yoon IK, Cummings DA, Mammen MP Jr.

Demographic, clinical and laboratory findings among adult and pediatric patients hospitalized with dengue in the Philippines.

Southeast Asian J Trop Med Public Health, 2014; 45: 337-45..

Kwok KO, Jiang C, Tan L, Justin L, Read JM, Zhu H, Guan Y, Cummings DA, Riley S.

[An international collaborative study on influenza viruses antibody titers and contact patterns of individuals in rural and urban household of Guangzhou].

Zhonghua Liu Xing Bing Xue Za Zhi, 2014; 35: 433-6.

Ng OT, Laeyendecker O, Redd AD, Munshaw S, Grabowski MK, Paquet AC, Evans MC, Haddad M, Huang W, Robb ML, Reynolds SJ, Gray RH, Wawer MJ, Serwadda D, Eshleman SH, Quinn TC.

HIV type 1 polymerase gene polymorphisms are associated with phenotypic differences in replication capacity and disease progression.

J Infect Dis, 2014; 209: 66-73. 10.1093/infdis/jit425

Salje H, Gurley ES, Homaira N, Ram PK, Haque R, Petri W, Moss WJ, Luby SP, Breysse P, Azziz-Baumgartner E.

Impact of neighborhood biomass cooking patterns on episodic high indoor particulate matter concentrations in clean fuel homes in Dhaka, Bangladesh.

Indoor Air, 2014; 24: 213-20. 10.1111/ina.12065

Rainwater-Lovett K, Nkamba HC, Mubiana-Mbewe M, Moore CB, Margolick JB, Moss WJ.

Antiretroviral therapy restores age-dependent loss of resting memory B cells in young HIV-infected Zambian children.

J Acquir Immune Defic Syndr, 2014; 65: 505-9. 10.1097/QAI.0000000000000074

Gurley ES, Salje H, Homaira N, Ram PK, Haque R, Petri WA Jr, Bresee J, Moss WJ, Luby SP, Breysse P, Azziz-Baumgartner E.

Indoor exposure to particulate matter and age at first acute lower respiratory infection in a low-income urban community in Bangladesh.

Am J Epidemiol, 2014; 179: 967-73. 10.1093/aje/kwu002

Rainwater-Lovett K, Nkamba H, Mubiana-Mbewe M, Moore CB, Margolick J, Moss WJ.

Changes in cellular immune activation and memory T-cell subsets in HIV-infected Zambian children receiving HAART.

J Acquir Immune Defic Syndr, 2014; 67: 455-62. 10.1097/QAI.0000000000000342

Moore SM, Shannon KL, Zelaya CE, Azman AS, Lessler J.

Epidemic risk from cholera introductions into Mexico.

PLoS Curr, 2014; 6: . 10.1371/currents.outbreaks.c04478c7fbd9854ef6ba923cc81eb799

Anderson KB, Gibbons RV, Cummings DA, Nisalak A, Green S, Libraty DH, Jarman RG, Srikiatkhachorn A, Mammen MP, Darunee B, Yoon IK, Endy TP.

A shorter time interval between first and second dengue infections is associated with protection from clinical illness in a school-based cohort in Thailand.

J Infect Dis, 2014; 209: 360-8. 10.1093/infdis/jit436

Liu SH, Cummings DA, Zenilman JM, Gravitt PE, Brotman RM.

Characterizing the temporal dynamics of human papillomavirus DNA detectability using short-interval sampling.

Cancer Epidemiol Biomarkers Prev, 2014; 23: 200-8. 10.1158/1055-9965.EPI-13-0666

Rodriguez-Barraquer I, Mier-y-Teran-Romero L, Schwartz IB, Burke DS, Cummings DA.

Potential opportunities and perils of imperfect dengue vaccines.

Vaccine, 2014; 32: 514-20. 10.1016/j.vaccine.2013.11.020

Smith DL, Perkins TA, Reiner RC Jr, Barker CM, Niu T, Chaves LF, Ellis AM, George DB, Le Menach A, Pulliam JR, Bisanzio D, Buckee C, Chiyaka C, Cummings DA, Garcia AJ, Gatton ML, Gething PW, Hartley DM, Johnston G, Klein EY, Michael E, Lloyd AL, et al.

Recasting the theory of mosquito-borne pathogen transmission dynamics and control.

Trans R Soc Trop Med Hyg, 2014; 108: 185-97. 10.1093/trstmh/tru026

Grabowski MK, Lessler J, Redd AD, Kagaayi J, Laeyendecker O, Ndyanabo A, Nelson MI, Cummings DA, Bwanika JB, Mueller AC, Reynolds SJ, Munshaw S, Ray SC, Lutalo T, Manucci J, Tobian AA, Chang LW, Beyrer C, Jennings JM, Nalugoda F, Serwadda D, Wawer MJ, et al.

The role of viral introductions in sustaining community-based HIV epidemics in rural Uganda: evidence from spatial clustering, phylogenetics, and egocentric transmission models.

PLoS Med, 2014; 11: e1001610. 10.1371/journal.pmed.1001610

Althouse BM, Durbin AP, Hanley KA, Halstead SB, Weaver SC, Cummings DA.

Viral kinetics of primary dengue virus infection in non-human primates: a systematic review and individual pooled analysis.

Virology, 2014; 452-453: 237-46. 10.1016/j.virol.2014.01.015

Rudolph KE, Lessler J, Moloney RM, Kmush B, Cummings DA.

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Publications

Demographic, clinical and laboratory findings among adult and pediatric patients hospitalized with dengue in the Philippines.

[An international collaborative study on influenza viruses antibody titers and contact patterns of individuals in rural and urban household of Guangzhou].

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