Publications

Azman A, Luquero Alcalde FJ, Salje H, Naibei N, Adalbert N, Ali M, Bertuzzo E, Finger F, Toure B, Massing LA, Ramazani R, Cardon A, Saga B, Allan M, Olson D, Leglise J, Porten K, Lessler J.

Micro-hotspots of Risk in Urban Cholera Epidemics.

J Infect Dis, 2018; : . 10.1093/infdis/jiy283

Hassan MZ, Sazzad HMS, Luby SP, Sturm-Ramirez K, Bhuiyan MU, Rahman MZ, Islam MM, Ströher U, Sultana S, Kafi MAH, Daszak P, Rahman M, Gurley ES.

Nipah Virus Contamination of Hospital Surfaces during Outbreaks, Bangladesh, 2013–2014 .

Emerg Infect Dis, 2018; 24(1): 15-21. 10.3201/eid2401.161758

Winter AK, Pramanik S, Lessler J, Ferrari M, Grenfell BT, Metcalf CJE.

Rubella vaccination in India: identifying broad consequences of vaccine introduction and key knowledge gaps.

Epidemiol Infect, 2018; 146(1): 65-77. 10.1017/S0950268817002527

Salje H, Lessler J, Berry IM, Melendrez M, Endy T, Kalanarooj S, A-Nuegoonpipat A, Chanama S, Sangkijporn S, Klungthong C, Thaisomboonsuk B, Nisalak A, Gibbons RV, Iamsirithaworn S, Macareo L, Yoon IK, Sangarsang A, Jarman R, Cummings DAT

Dengue diversity across spatial and temporal scales: Local structure and the effect of host population size

Science, 2017; 355(6331): 1302-1306. 10.1126/science.aaj9384

Muscatello DJ, Chughtai AA, Heywood A, Gardner LJ, Heslop DJ, MacIntyre CR

Translation of Real-Time Infectious Disease Modeling into Routine Public Health Practice

Emerg Infect Dis, 2017; 23(5): . 10.3201/eid2305.161720

Bóta A, Gardner LM

Identifying critical components of a public transit system for outbreak control

Netw Spat Econ, 2017; 17(4): 1137–1159. 10.1007/s11067-017-9361-2

Bui CM, Gardner L, MacIntyre R, Sarkar S

Influenza A H5N1 and H7N9 in China: A spatial risk analysis.

PLoS One, 2017; 12(4): e0174980. 10.1371/journal.pone.0174980

Gardner L, Chen N, Sarkar S

Vector status of Aedes species determines geographical risk of autochthonous Zika virus establishment

PLoS Negl Trop Dis, 2017; 11(3): e0005487. 10.1371/journal.pntd.0005487

Kassanjee R, De Angelis D, Farah M, Hanson D, Labuschagne JPL, Laeyendecker O, Le Vu S, Tom B, Wang R, Welte A

Cross-Sectional HIV Incidence Surveillance: A Benchmarking of Approaches for Estimating the 'Mean Duration of Recent Infection'

Stat Commun Infect Dis, 2017; 9(1): . doi:10.1515/scid-2016-0002

Fearon E, Wiggins RD, Pettifor AE, MacPhail C, Kahn K, Selin A, Gómez-Olivé FX, Delany-Moretlwe S, Piwowar-Manning E, Laeyendecker O, Hargreaves JR

Associations between friendship characteristics and HIV and HSV-2 status amongst young South African women in HPTN-068.

J Int AIDS Soc, 2017; 20(4): e25029. 10.1002/jia2.25029

Wesolowski A, Zu Erbach-Schoenberg E, Tatem AJ, Lourenço C, Viboud C, Charu V, Eagle N, Engø-Monsen K, Qureshi T, Buckee CO, Metcalf CJE.

Multinational patterns of seasonal asymmetry in human movement influence infectious disease dynamics.

Nat Commun, 2017; 8(1): 2069. 10.1038/s41467-017-02064-4

Metcalf CJE, Walter KS, Wesolowski A, Buckee CO, Shevliakova E, Tatem AJ, Boos WR, Weinberger DM, Pitzer VE.

Identifying climate drivers of infectious disease dynamics: recent advances and challenges ahead

Proc Biol Sci, 2017; 284(1860): pii: 20170. 10.1098/rspb.2017.0901

Sarkar S, Hossain ME, Gurley ES, Hasan R, Rahman MZ

An outbreak of classical swine fever in pigs in Bangladesh, 2015.

Vet Med Sci, 2017; 4(1): 45-52. 10.1002/vms3.81

Fogel JM, Piwowar-Manning E, Debevec B, Walsky T, Schlusser K, Laeyendecker O, Wilson EA, McCauley M, Gamble T, Tegha G, Soko D, Kumwenda J, Hosseinipour MC, Chen YQ, Cohen MS, Eshleman SH.

Brief Report: Impact of Early Antiretroviral Therapy on the Performance of HIV Rapid Tests and HIV Incidence Assays.

J Acquir Immune Defic Syndr, 2017; 75(4): 426-430. 10.1097/QAI.0000000000001421

Kirkpatrick AR, Unsal AB, Blankson JN, Moore RD, Quinn TC, Hadigan C, Laeyendecker O.

Weak HIV Antibody Responses in Perinatally Infected Young Adults: Weak HIV Antibody Responses in Perinatally Infected Adults.

Pediatr Infect Dis J, 2017; 36(11): 1064-1066. 10.1097/INF.0000000000001649

Lynch BA, Patel EU, Courtney CR, Nanfack AJ, Bimela J, Wang X, Eid I, Quinn TC, Laeyendecker O, Nyambi PN, Duerr R, Redd AD.

Short Communication: False Recent Ratio of the Limiting-Antigen Avidity Assay and Viral Load Testing Algorithm Among Cameroonians with Long-Term HIV Infection.

AIDS Res Hum Retroviruses, 2017; 33(11): 1114-1116. 10.1089/AID.2017.0084

Rose R, Lamers SL, Massaccesi G, Osburn W, Ray SC, Thomas DL, Cox AL, Laeyendecker O.

Complex patterns of Hepatitis-C virus longitudinal clustering in a high-risk population.

Infect Genet Evol, 2017; 58: 77-82. 10.1016/j.meegid.2017.12.015

Halloran ME, Auranen K, Baird S, Basta NE, Bellan SE, Brookmeyer R, Cooper BS, DeGruttola V, Hughes JP, Lessler J, Lofgren ET, Longini IM, Onnela JP, Özler B, Seage GR, Smith TA, Vespignani A, Vynnycky E, Lipsitch M.

Simulations for designing and interpreting intervention trials in infectious diseases.

BMC Med, 2017; 15(1): 223. 10.1186/s12916-017-0985-3

Keegan LT, Lessler J, Johansson MA.

Quantifying Zika: Advancing the Epidemiology of Zika With Quantitative Models.

J Infect Dis, 2017; 216(suppl_10): S884-S890. 10.1093/infdis/jix437

Grabowski MK, Serwadda DM, Gray RH, Nakigozi G, Kigozi G, Kagaayi J, Ssekubugu R, Nalugoda F, Lessler J, Lutalo T, Galiwango RM, Makumbi F, Kong X, Kabatesi D, Alamo ST, Wiersma S, Sewankambo NK, Tobian AAR, Laeyendecker O, Quinn TC, Reynolds SJ, Wawer MJ, Chang LW; Rakai Health Sciences Program.

HIV Prevention Efforts and Incidence of HIV in Uganda

N Engl J Med., 2017; 377(22): 2154-2166.. 10.1056/NEJMoa1702150

Grabowski MK, Reynolds S, Kagaayi J, Gray R, Clarke W, Chang L, Nakigozi G, Laeyndecker O, Redd A, Goud-Billoux V, Ssekubugu R, Nalugoda F, Wawer M, Serwadda D, Quinn T, Tobian A.

The validity of self-reported antiretroviral use in persons living with HIV: a population-based study.

AIDS, 2017; : . 10.1097/QAD.0000000000001706.

von Seidlein L, Sack D, Azman AS, Ivers LC, Lopez AL, Deen JL.

Cholera outbreak in Yemen.

Lancet Gastroenterol Hepatol., 2017; 2(11): 777. 10.1016/S2468-1253(17)30287-X

Blanquart F, Wymant C, Cornelissen M, Gall A, Bakker M, Bezemer D, Hall M, Hillebregt M, Ong SH, Albert J, Bannert N, Fellay J, Fransen K, Gourlay AJ, Grabowski MK, Gunsenheimer-Bartmeyer B, Günthard HF, Kivelä P, Kouyos R, Laeyendecker O, Liitsola K, Meyer L, Porter K, van Sighem MRA, Vanham G, Berkhout B, Kellam P, Reiss P, Fraser C, BEEHIVE collaboration.

Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe.

PLoS Biol, 2017; 15(7): e1002608. 10.1371/journal.pbio.2001855

Shanta IS, Hasnat MA, Zeidner N, Gurley ES, Azziz‐Baumgartner E, Sharker MAY, Hossain K, Khan SU, Haider N, Bhuyan AA, Hossain MA, Luby SP.

Raising backyard poultry in rural Bangladesh: Financial and nutritional benefits, but persistent risky practices.

Transbound Emerg Dis, 2017; 64(5): 1454-1464. 10.1111/tbed.12536

Nahar N, Paul RC, Sultana R, Sumon SA, Banik KC, Abedin J, Asaduzzaman M, Garcia F, Zimicki S, Rahman M, Gurley ES, Luby SP.

A controlled trial to reduce the risk of human Nipah virus exposure in Bangladesh.

EcoHealth, 2017; : 1-17. 10.1007/s10393-017-1267-4

Islam MS, Sharif AR, Sazzad HMS, Dawlat Khan AKM , Hasan M, Akter S, Rahman M, Luby SP, Heffelfinger JD, Gurley ES.

Outbreak of Sudden Death with Acute Encephalitis Syndrome Among Children Associated with Exposure to Lychee Orchards in Northern Bangladesh, 2012.

Am J Trop Med Hyg, 2017; 97(3): 949-957. 10.4269/ajtmh.16-0856

Ray EL, Sakrejda K, Lauer SA, Johansson MA, Reich NG.

Infectious disease prediction with kernel conditional density estimation.

Stat Med, 2017; : . 10.1002/sim.7488

Gurley ES, Hegde ST, Hossain K, Sazzad HMS, Hossain MJ, Rahman M, Sharker MAY, Salje H, Islam MS, Epstein JH, Khan SU, Kilpatrick AM, Daszak P, Luby SP.

Convergence of Humans, Bats, Trees, and Culture in Nipah Virus Transmission, Bangladesh.

Emerg Infect Dis, 2017; 23(9): 1446-53. 10.3201/eid2309.161922

Metcalf CJE, Lessler J.

Opportunities and challenges in modeling emerging infectious diseases.

Science, 2017; 157(6347): 149-152. 10.1126/science.aam8335

Bi Q, Ferraras E, Pezzoli L, Legros D, Ivers LC, Date K, Qadri F, Digilio L, Sack DA, Ali M, Lessler J, Luquero FJ, Azman AS.

Protection against cholera from killed whole-cell oral cholera vaccines: a systematic review and meta-analysis.

Lancet Infect Dis, 2017; : . 10.1016/S1473-3099(17)30359-6

Parkler LA, Rumunu J, Jamet C, Kenyi Y, Lino RL, Wamala JF, Mpairwe AM, Muller V, Llosa AE, Uzzeni F, Luquero FJ, Cignlenecki I, Azman AS.

Neighborhood-targeted and case-triggered use of a single dose of oral cholera vaccine in an urban setting: Feasibility and vaccine coverage.

PLOS Negl Trop Dis, 2017; : . 10.1371/journal.pntd.0005652

Kirsch TD, Moseson H, Massaquoi M, Nyenswah TG, Goodermorte R, Rodriguez-Barraquer I, Lessler J, Cummings DAT, Peters DH.

Impact of interventions and the incidence of Ebola virus disease in Liberia-implications for future epidemics.

Health Policy Plan, 2017; 32(4): 602. 10.1093/heapol/czw163

Blanquart F, Wymant C, Cornelissen M, Gall A, Bakker M, Bezemer D, Hall M, Hillebregt M, Ong SH, Albert J, Bannert N, Fellay J, Fransen K, Gourlay AJ, Grabowski MK, Gunsenheimer-Bartmeyer B, Günthard HF, Kivelä P, Kouyos R, Laeyendecker O, Liitsola K, Meyer L, Porter K, Ristola M, van Sighem A, Vanham G, Berkhout B, Kellam P, Reiss P, Fraser C, Beehive Collaboration.

Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe.

PLoS Biol, 2017; 15(6): e2001855. 10.1371/journal.pbio.2001855

Ratmann O, Wymant C, Colijn C, Danaviah S, Essex M, Frost SDW, Gall A, Gaiseitsiwe S, Grabowski M, Gray R, Guindon S, von Haeseler A, Kaleebu P, Kendall M, Kozlov A, Manasa J, Minh BQ, Moyo S, Novitsky V, Nsubuga R, Pillay S, Quinn TC, Serwadda D, Ssemwanga D, Stamatakis A, Trifinopoulos J, Wawer M, Leigh Brown A, de Oliveira T, Kellam P, Pillay D, Fraser C.

HIV-1 full-genome phylogenetics of generalized epidemics in sub-Saharan Africa: impact of missing nucleotide characters in next-generation sequences.

AIDS Res Hum Retroviruses, 2017; : . 10.1089/AID.2017.0061

Billioux VG, Chang LW, Reynolds SJ, Nakigozi G, Ssekasanvu J, Grabowski MK, Ssekubugu R, Nalugoda F, Kigozi G, Kagaayi J, Serwadda D, Gray RH, Wawer MJ.

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