Ihantamalala FA, Rakotoarimanana FMJ, Ramiadantsoa T, Rakotondramanga JM, Pennober G, Rakotomanana F, Cauchemez S, Metcalf CJE, Herbreteau V, Wesolowski A.

Spatial and temporal dynamics of malaria in Madagascar.

Malar J, 2018; 17(1): 58. 10.1186/s12936-018-2206-8
Morris SE, Freiesleben de Blasio B, Viboud C, Wesolowski A, Bjørnstad ON, Grenfell BT.1

Analysis of multi-level spatial data reveals strong synchrony in seasonal influenza epidemics across Norway, Sweden, and Denmark.

PLoS One, 2018; 13(5): e0197519.. 10.1371/journal.pone.0197519
Wesolowski A, Taylor A, Chang H, Verity R, Tessema S, Bailey J, Perkins TA, Neafsey D, Greenhouse B, Buckee CO.

Mapping malaria by combining parasite genomic and epidemiologic data.

bioRxiv, 2018; : . 10.1101/288506
Rahman MZ, Haider N, Gurley ES, Ahmed S, Osmani MG, Hossain MB, Islam A, Khan SA, Hossain ME, Epstein JH, Zeidner N, Rahman M.

Epidemiology and genetic characterization of Peste des petits ruminants virus in Bangladesh.

Vet Med Sci, 2018; : . 10.1002/vms3.98
Rieckmann A, Tamason CC, Gurley ES, Rod NH, Jensen PKM.

Exploring Droughts and Floods and Their Association with Cholera Outbreaks in Sub-Saharan Africa: A Register-Based Ecological Study from 1990 to 2010.

Am J Trop Med Hyg, 2018; 98(5): 1269-1274. 10.4269/ajtmh.17-0778
Lauer SA, Sakrejda K, Ray EL, Keegan LT, Bi Q, Suangtho P, Hinjoy S, Iamsirithaworn S, Suthachana S, Laosiritaworn Y, Cummings DAT, Lessler J, Reich NG

Prospective forecasts of annual dengue hemorrhagic fever incidence in Thailand, 2010-2014.

Proc Natl Acad Sci U S A, 2018; : pii: 20171. 10.1073/pnas.1714457115
Utazi CE, Thorley J, Alegana VA, Ferrari MJ, Takahashi S, Metcalf CJE, Lessler J, Tatem AJ.

High resolution age-structured mapping of childhood vaccination coverage in low and middle income countries.

Vaccine, 2018; 36(12): 1583-1591. 10.1016/j.vaccine.2018.02.020
Cortes MC, Cauchemez S, Lefrancq N, Luby SP, Hossain MJ, Sazzad HMS, Rahman M, Daszak P, Salje H, Gurley ES.

Characterization of the spatial and temporal distribution of Nipah virus spillover events in Bangladesh 2007–2013.

J Infect Dis, 2018; : . 10.1093/infdis/jiy015
Ahmed M, Abedin J, Alam KF, Al Mamun A, Paul RC, Rahman M, Iuliano AD, Sturm-Ramirez K, Parashar U, Luby SP, Gurley ES.

Incidence of Acute Diarrhea-Associated Death among Children < 5 Years of Age in Bangladesh, 2010-12.

Am J Trop Med Hyg, 2018; 98(1): 281-286. 10.4269/ajtmh.17-0384
Ahmed M, Aleem MA, Roguski K, Abedin J, Islam A, Alam KF, Gurley ES, Rahman M, Azziz-Baumgartner E, Homaira N, Sturm-Ramirez K, Danielle Iuliano A.

Estimates of seasonal influenza‐associated mortality in Bangladesh, 2010‐2012.

Influenza Other Respir Viruses, 2018; 12(1): 65-71. 10.1111/irv.12490
Olawore O, Tobian AAR, Kagaayi J, Bazaale JM, Nantume B, Kigozi G, Nankinga J, Nalugoda F, Nakigozi G, Kigozi G, Gray RH, Wawer MJ, Ssekubugu R.

Migration and risk of HIV acquisition in Rakai, Uganda: a population-based cohort study.

Lancet HIV, 2018; : . 10.1016/S2352-3018(18)30009-2
Grabowski MK, Herbeck JT, Poon AFY.

Genetic Cluster Analysis for HIV Prevention.

Curr HIV/AIDS Rep, 2018; : 1-8. 10.1007/s11904-018-0384-1
Grabowski MK, Reynolds SJ, Kagaayi J, Gray RH, Clarke W, Chang LW, Nakigozi G, Laeyndecker O, Redd AD, Billioux V, Ssekubugu R, Nalugoda F, Wawer MJ, Serwadda D, Quinn TC, Tobian AAR.

The validity of self-reported antiretroviral use in persons living with HIV: a population-based study.

AIDS, 2018; 32(3): 363-369. 10.1097/QAD.0000000000001706
Billioux VG, Grabowski MK, Ssekasanvu J, Reynolds SJ, Berman A, Bazaale J, Patel EU, Bugos E, Ndyanabo A, Kisakye A, Kagaayi J, Gray RH, Nakigozi G, Ssekubugu R, Nalugoda F, Serwadda D, Wawer MJ, Chang LW.

HIV viral suppression and geospatial patterns of HIV antiretroviral therapy treatment facility use in Rakai, Uganda.

AIDS, 2018; : . 10.1097/QAD.0000000000001761
Azman A, Luquero Alcalde FJ, Salje H, Naibei N, Adalbert N, Ali M, Bertuzzo E, Finger F, Toure B, Massing LA, Ramazani R, Cardon A, Saga B, Allan M, Olson D, Leglise J, Porten K, Lessler J.

Micro-hotspots of Risk in Urban Cholera Epidemics.

J Infect Dis, 2018; : . 10.1093/infdis/jiy283
Hassan MZ, Sazzad HMS, Luby SP, Sturm-Ramirez K, Bhuiyan MU, Rahman MZ, Islam MM, Ströher U, Sultana S, Kafi MAH, Daszak P, Rahman M, Gurley ES.

Nipah Virus Contamination of Hospital Surfaces during Outbreaks, Bangladesh, 2013–2014 .

Emerg Infect Dis, 2018; 24(1): 15-21. 10.3201/eid2401.161758
Winter AK, Pramanik S, Lessler J, Ferrari M, Grenfell BT, Metcalf CJE.

Rubella vaccination in India: identifying broad consequences of vaccine introduction and key knowledge gaps.

Epidemiol Infect, 2018; 146(1): 65-77. 10.1017/S0950268817002527
Salje H, Lessler J, Berry IM, Melendrez M, Endy T, Kalanarooj S, A-Nuegoonpipat A, Chanama S, Sangkijporn S, Klungthong C, Thaisomboonsuk B, Nisalak A, Gibbons RV, Iamsirithaworn S, Macareo L, Yoon IK, Sangarsang A, Jarman R, Cummings DAT

Dengue diversity across spatial and temporal scales: Local structure and the effect of host population size

Science, 2017; 355(6331): 1302-1306. 10.1126/science.aaj9384
Muscatello DJ, Chughtai AA, Heywood A, Gardner LJ, Heslop DJ, MacIntyre CR

Translation of Real-Time Infectious Disease Modeling into Routine Public Health Practice

Emerg Infect Dis, 2017; 23(5): . 10.3201/eid2305.161720
Bóta A, Gardner LM

Identifying critical components of a public transit system for outbreak control

Netw Spat Econ, 2017; 17(4): 1137–1159. 10.1007/s11067-017-9361-2
Bui CM, Gardner L, MacIntyre R, Sarkar S

Influenza A H5N1 and H7N9 in China: A spatial risk analysis.

PLoS One, 2017; 12(4): e0174980. 10.1371/journal.pone.0174980
Gardner L, Chen N, Sarkar S

Vector status of Aedes species determines geographical risk of autochthonous Zika virus establishment

PLoS Negl Trop Dis, 2017; 11(3): e0005487. 10.1371/journal.pntd.0005487
Kassanjee R, De Angelis D, Farah M, Hanson D, Labuschagne JPL, Laeyendecker O, Le Vu S, Tom B, Wang R, Welte A

Cross-Sectional HIV Incidence Surveillance: A Benchmarking of Approaches for Estimating the 'Mean Duration of Recent Infection'

Stat Commun Infect Dis, 2017; 9(1): . doi:10.1515/scid-2016-0002
Fearon E, Wiggins RD, Pettifor AE, MacPhail C, Kahn K, Selin A, Gómez-Olivé FX, Delany-Moretlwe S, Piwowar-Manning E, Laeyendecker O, Hargreaves JR

Associations between friendship characteristics and HIV and HSV-2 status amongst young South African women in HPTN-068.

J Int AIDS Soc, 2017; 20(4): e25029. 10.1002/jia2.25029
Wesolowski A, Zu Erbach-Schoenberg E, Tatem AJ, Lourenço C, Viboud C, Charu V, Eagle N, Engø-Monsen K, Qureshi T, Buckee CO, Metcalf CJE.

Multinational patterns of seasonal asymmetry in human movement influence infectious disease dynamics.

Nat Commun, 2017; 8(1): 2069. 10.1038/s41467-017-02064-4
Metcalf CJE, Walter KS, Wesolowski A, Buckee CO, Shevliakova E, Tatem AJ, Boos WR, Weinberger DM, Pitzer VE.

Identifying climate drivers of infectious disease dynamics: recent advances and challenges ahead

Proc Biol Sci, 2017; 284(1860): pii: 20170. 10.1098/rspb.2017.0901
Sarkar S, Hossain ME, Gurley ES, Hasan R, Rahman MZ

An outbreak of classical swine fever in pigs in Bangladesh, 2015.

Vet Med Sci, 2017; 4(1): 45-52. 10.1002/vms3.81
Fogel JM, Piwowar-Manning E, Debevec B, Walsky T, Schlusser K, Laeyendecker O, Wilson EA, McCauley M, Gamble T, Tegha G, Soko D, Kumwenda J, Hosseinipour MC, Chen YQ, Cohen MS, Eshleman SH.

Brief Report: Impact of Early Antiretroviral Therapy on the Performance of HIV Rapid Tests and HIV Incidence Assays.

J Acquir Immune Defic Syndr, 2017; 75(4): 426-430. 10.1097/QAI.0000000000001421
Kirkpatrick AR, Unsal AB, Blankson JN, Moore RD, Quinn TC, Hadigan C, Laeyendecker O.

Weak HIV Antibody Responses in Perinatally Infected Young Adults: Weak HIV Antibody Responses in Perinatally Infected Adults.

Pediatr Infect Dis J, 2017; 36(11): 1064-1066. 10.1097/INF.0000000000001649
Lynch BA, Patel EU, Courtney CR, Nanfack AJ, Bimela J, Wang X, Eid I, Quinn TC, Laeyendecker O, Nyambi PN, Duerr R, Redd AD.

Short Communication: False Recent Ratio of the Limiting-Antigen Avidity Assay and Viral Load Testing Algorithm Among Cameroonians with Long-Term HIV Infection.

AIDS Res Hum Retroviruses, 2017; 33(11): 1114-1116. 10.1089/AID.2017.0084
Rose R, Lamers SL, Massaccesi G, Osburn W, Ray SC, Thomas DL, Cox AL, Laeyendecker O.

Complex patterns of Hepatitis-C virus longitudinal clustering in a high-risk population.

Infect Genet Evol, 2017; 58: 77-82. 10.1016/j.meegid.2017.12.015
Halloran ME, Auranen K, Baird S, Basta NE, Bellan SE, Brookmeyer R, Cooper BS, DeGruttola V, Hughes JP, Lessler J, Lofgren ET, Longini IM, Onnela JP, Özler B, Seage GR, Smith TA, Vespignani A, Vynnycky E, Lipsitch M.

Simulations for designing and interpreting intervention trials in infectious diseases.

BMC Med, 2017; 15(1): 223. 10.1186/s12916-017-0985-3
Keegan LT, Lessler J, Johansson MA.

Quantifying Zika: Advancing the Epidemiology of Zika With Quantitative Models.

J Infect Dis, 2017; 216(suppl_10): S884-S890. 10.1093/infdis/jix437
Grabowski MK, Serwadda DM, Gray RH, Nakigozi G, Kigozi G, Kagaayi J, Ssekubugu R, Nalugoda F, Lessler J, Lutalo T, Galiwango RM, Makumbi F, Kong X, Kabatesi D, Alamo ST, Wiersma S, Sewankambo NK, Tobian AAR, Laeyendecker O, Quinn TC, Reynolds SJ, Wawer MJ, Chang LW; Rakai Health Sciences Program.

HIV Prevention Efforts and Incidence of HIV in Uganda

N Engl J Med., 2017; 377(22): 2154-2166.. 10.1056/NEJMoa1702150
Grabowski MK, Reynolds S, Kagaayi J, Gray R, Clarke W, Chang L, Nakigozi G, Laeyndecker O, Redd A, Goud-Billoux V, Ssekubugu R, Nalugoda F, Wawer M, Serwadda D, Quinn T, Tobian A.

The validity of self-reported antiretroviral use in persons living with HIV: a population-based study.

AIDS, 2017; : . 10.1097/QAD.0000000000001706.
von Seidlein L, Sack D, Azman AS, Ivers LC, Lopez AL, Deen JL.

Cholera outbreak in Yemen.

Lancet Gastroenterol Hepatol., 2017; 2(11): 777. 10.1016/S2468-1253(17)30287-X
Blanquart F, Wymant C, Cornelissen M, Gall A, Bakker M, Bezemer D, Hall M, Hillebregt M, Ong SH, Albert J, Bannert N, Fellay J, Fransen K, Gourlay AJ, Grabowski MK, Gunsenheimer-Bartmeyer B, Günthard HF, Kivelä P, Kouyos R, Laeyendecker O, Liitsola K, Meyer L, Porter K, van Sighem MRA, Vanham G, Berkhout B, Kellam P, Reiss P, Fraser C, BEEHIVE collaboration.

Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe.

PLoS Biol, 2017; 15(7): e1002608. 10.1371/journal.pbio.2001855
Shanta IS, Hasnat MA, Zeidner N, Gurley ES, Azziz‐Baumgartner E, Sharker MAY, Hossain K, Khan SU, Haider N, Bhuyan AA, Hossain MA, Luby SP.

Raising backyard poultry in rural Bangladesh: Financial and nutritional benefits, but persistent risky practices.

Transbound Emerg Dis, 2017; 64(5): 1454-1464. 10.1111/tbed.12536
Nahar N, Paul RC, Sultana R, Sumon SA, Banik KC, Abedin J, Asaduzzaman M, Garcia F, Zimicki S, Rahman M, Gurley ES, Luby SP.

A controlled trial to reduce the risk of human Nipah virus exposure in Bangladesh.

EcoHealth, 2017; : 1-17. 10.1007/s10393-017-1267-4
Islam MS, Sharif AR, Sazzad HMS, Dawlat Khan AKM , Hasan M, Akter S, Rahman M, Luby SP, Heffelfinger JD, Gurley ES.

Outbreak of Sudden Death with Acute Encephalitis Syndrome Among Children Associated with Exposure to Lychee Orchards in Northern Bangladesh, 2012.

Am J Trop Med Hyg, 2017; 97(3): 949-957. 10.4269/ajtmh.16-0856