Publications
Ending the HIV Epidemic: Towards an Evidence-Based Approach
Clin Infect Dis, 2019; : . 10.1093/cid/ciz1018
Clinical Consequences of Using an Indeterminate Range for Early Infant Diagnosis of HIV: A Decision Model
J Acquir Immune Defic Syndr, 2019; 82(3): 287-296. 10.1097/QAI.0000000000002155
Comprehensive Profiling of HIV Antibody Evolution
Cell Rep, 2019; 27(5): 1422-1433. 10.1016/j.celrep.2019.03.097
Cross-sectional HIV incidence estimation in an evolving epidemic
Stat Med, 2019; 38(19): 3614-3627. 10.1002/sim.8196
Multilevel Measures of Education and Pathways to Incident Herpes Simplex Virus Type 2 in Adolescent Girls and Young Women in South Africa
J Adolesc Health, 2019; : . 10.1016/j.jadohealth.2019.06.008
Longitudinal antibody responses in people who inject drugs infected with similar HIV strains
J Infect Dis, 2019; : . 10.1093/infdis/jiz503
Integrating HCV testing with HIV programs improves hepatitis C outcomes in people who inject drugs: A cluster-randomized trial
J Hepatol, 2019; : . 10.1016/j.jhep.2019.09.022
Association between the respiratory microbiome and susceptibility to influenza virus infection
Clin Infect Dis, 2019; : pii: ciz96. 10.1093/cid/ciz968
The respiratory microbiota: associations with influenza symptomatology and viral shedding
Ann Epidemiol, 2019; 37: 51-56.e6. 10.1016/j.annepidem.2019.07.013
A dynamic neural network model for predicting risk of Zika in real time
BMC Med, 2019; 17(1): 171. 10.1186/s12916-019-1389-3
Travel Surveillance and Genomics Uncover a Hidden Zika Outbreak during the Waning Epidemic.
Cell, 2019; 178(5): 1057-1071. 10.1016/j.cell.2019.07.018
Discovering the Hidden Community Structure of Public Transportation Networks
Netw Spat Econ, 2019; : . 10.1007/s11067-019-09476-3
How Mobility Patterns Drive Disease Spread: A Case Study Using Public Transit Passenger Card Travel Data
IEEE World of Wireless, Mobile and Multimedia Networks (WoWMoM) Conference Proceedings, 2019; : . 10.1109/WoWMoM.2019.8793018
The use of GPS data loggers to describe the impact of spatio-temporal movement patterns on malaria control in a high-transmission area of northern Zambia
Int J Health Geogr, 2019; 18(1): 19. 10.1186/s12942-019-0183-y
Improved inference of time-varying reproduction numbers during infectious disease outbreaks
Epidemics, 2019; : 100356. 10.1016/j.epidem.2019.100356
Cholera prevention and control in refugee settings: Successes and continued challenges
PLoS Negl Trop Dis, 2019; 13(6): e0007347. 10.1371/journal.pntd.0007347
Measles and the canonical path to elimination
Science, 2019; 364(6440): 584-587. 10.1126/science.aau6299
The impact of three years of targeted IRS with pirimiphos-methyl on malaria parasite prevalence in a high-transmission area of northern Zambia
Am J Epidemiol, 2019; : pii: kwz10. 10.1093/aje/kwz107
Risk Factors for Household Vector Abundance Using Indoor CDC Light Traps in a High Malaria Transmission Area of Northern Zambia
Am J Trop Med Hyg, 2019; 101(1): 126-136. 10.4269/ajtmh.18-0875
Mapping vaccination coverage to explore the effects of delivery mechanisms and inform vaccination strategies
Nat Commun, 2019; 10(1): 1633. 10.1038/s41467-019-09611-1
A methodological comparison of risk scores versus decision trees for predicting drug-resistant infections: A case study using extended-spectrum beta-lactamase (ESBL) bacteremia
Infect Control Hosp Epidemiol, 2019; 40(4): 400-407. 10.1017/ice.2019.17
Differential mobility and local variation in infection attack rate
PLoS Comput Biol, 2019; 15(1): e1006600. 10.1371/journal.pcbi.1006600
Comparison of US County-Level Public Health Performance Rankings With County Cluster and National Rankings: Assessment Based on Prevalence Rates of Smoking and Obesity and Motor Vehicle Crash Death Rates
JAMA Netw Open, 2019; 2(1): e186816. 10.1001/jamanetworkopen.2018.6816
Estimating the health impact of vaccination against 10 pathogens in 98 low and middle income countries from 2000 to 2030
medRxiv, 2019; : 19004358. 10.1101/19004358
Clinical and Epidemiological Aspects of Diphtheria: A Systematic Review and Pooled Analysis
Clin Infect Dis, 2019; : . 10.1093/cid/ciz808
Perfect counterfactuals for epidemic simulations
Philos Trans R Soc Lond B Biol Sci, 2019; 374(1776): 20180279. 10.1098/rstb.2018.0279
Serosolver: an open source tool to infer epidemiological and immunological dynamics from serological data
bioRxiv, 2019; : 730069. 10.1101/730069
Surveillance and the global fight against cholera: Setting priorities and tracking progress
Vaccine, 2019; : . 10.1016/j.vaccine.2019.06.037
The impact of geographic targeting of oral cholera vaccination in sub-Saharan Africa: a modeling study
bioRxiv, 2019; : . 10.1101/617076
Dengue after Zika: characterizing impacts of Zika emergence on endemic dengue transmission
bioRxiv, 2019; : 567537. 10.1101/567537
Hepatitis E should be considered a neglected tropical disease
PLoS Negl Trop Dis, 2019; 13(7): e0007453. 10.1371/journal.pntd.0007453
Hospital-based zoonotic disease surveillance in Bangladesh: design, field data and difficulties
Philos Trans R Soc Lond B Biol Sci, 2019; 374(1782): 2019001. 10.1098/rstb.2019.0019
Aminoglycoside-Induced Hearing Loss Among Patients Being Treated for Drug-Resistant Tuberculosis in South Africa: A Prediction Model
Clin Infect Dis, 2019; : pii: ciz28. 10.1093/cid/ciz289
Treatment of latent infection to achieve tuberculosis elimination in low-incidence countries
PLoS Med, 2019; 16(6): e1002824. 10.1371/journal.pmed.1002824
Operational characteristics of antiretroviral therapy clinics in Zambia: a time and motion analysis
BMC Health Serv Res, 2019; 19(1): 244. 10.1186/s12913-019-4096-z
Contact tracing versus facility-based screening for active TB case finding in rural South Africa: A pragmatic cluster-randomized trial (Kharitode TB)
PLoS Med, 2019; 16(4): e1002796. 10.1371/journal.pmed.1002796
What will it take to eliminate drug-resistant tuberculosis?
Int J Tuberc Lung Dis, 2019; 23(5): 535-546. 10.5588/ijtld.18.0217
Point of care Xpert MTB/RIF versus smear microscopy for tuberculosis diagnosis in southern African primary care clinics: a multicentre economic evaluation
Lancet Glob Health, 2019; 7(6): e798-e807. 10.1016/S2214-109X(19)30164-0
The economic case for typhoid conjugate vaccines in countries with medium and high incidence of infection
Lancet Infect Dis, 2019; pii: S1473-3099(19): 30054-4. 10.1016/S1473-3099(19)30054-4
Measles resurgence in the USA: how international travel compounds vaccine resistance
Lancet Infect Dis, 2019; : . 10.1016/S1473-3099(19)30231-2