Am J Epidemiol

70 years of TB Prevention: Efficacy, Effectiveness, Toxicity, Durability and Duration

Am J Epidemiol, 2019; : . 10.1093/aje/kwz172
Kendall EA, Durovni B, Martinson NA, Cavalacante S, Masonoke K, Saraceni V, Lebina L, Efron A, Cohn S, Chon S, Chaisson RE, Dowdy DW, Golub JE; THRio and TEKO teams

Adherence to tuberculosis preventive therapy measured by urine metabolite testing among people with HIV

AIDS, 2019; : . 10.1097/QAD.0000000000002380
Chaisson LH, Saraceni V, Cohn S, Seabrook D, Cavalcante S, Chaisson RE, Golub J, Durovni B

CD4 count stratification to guide tuberculosis preventive therapy for people living with HIV

AIDS, 2019; : . 10.1097/QAD.0000000000002398
Nathavitharana RR, Yoon C, Macpherson P, Dowdy DW, Cattamanchi A, Somoskovi A, Broger T, Ottenhoff THM, Arinaminpathy N, Lonnroth K, Reither K, Cobelens F, Gilpin C, Denkinger CM, Schumacher SG

Guidance for Studies Evaluating the Accuracy of Tuberculosis Triage Tests

J Infect Dis, 2019; 220(Supplement_3): S116-S125. 10.1093/infdis/jiz243
Fojo AT, Dowdy DW

Ending the HIV Epidemic: Towards an Evidence-Based Approach

Clin Infect Dis, 2019; : . 10.1093/cid/ciz1018
Salvatore P, Johnson K, Vojnov L, Doherty M, Dowdy D

Clinical Consequences of Using an Indeterminate Range for Early Infant Diagnosis of HIV: A Decision Model

J Acquir Immune Defic Syndr, 2019; 82(3): 287-296. 10.1097/QAI.0000000000002155
Eshleman SH, Laeyendecker O, Kammers K, Chen A, Sivay MV, Kottapalli S, Sie BM, Yuan T, Monaco DR, Mohan D, Wansley D, Kula T, Morrison C, Elledge SJ, Brookmeyer R, Ruczinski I, Larman HB

Comprehensive Profiling of HIV Antibody Evolution

Cell Rep, 2019; 27(5): 1422-1433. 10.1016/j.celrep.2019.03.097
Morrison D, Laeyendecker O, Brookmeyer R

Cross-sectional HIV incidence estimation in an evolving epidemic

Stat Med, 2019; 38(19): 3614-3627. 10.1002/sim.8196
Stoner MCD, Neilands TB, Kahn K, Hughes JP, Gómez-Olivé FX, Twine R, Tollman S, Laeyendecker O, MacPhail C, Ahern J, Lippman SA, Pettifor A

Multilevel Measures of Education and Pathways to Incident Herpes Simplex Virus Type 2 in Adolescent Girls and Young Women in South Africa

J Adolesc Health, 2019; : . 10.1016/j.jadohealth.2019.06.008
Redd AD, Doria-Rose NA, Weiner JA, Nason M, Seivers M, Schmidt SD, Laeyendecker O, Martens C, Bruno D, Keele BF, Raju N, Georgiev IS, Lamers SL, Astemborski J, Kirk GD, Mascola JR, Ackerman ME, Mehta SH, Quinn TC

Longitudinal antibody responses in people who inject drugs infected with similar HIV strains

J Infect Dis, 2019; : . 10.1093/infdis/jiz503
Solomon SS, Quinn TC, Solomon S, McFall AM, Srikrishnan AK, Verma V, Kumar MS, Laeyendecker O, Celentano DD, Iqbal SH, Anand S, Vasudevan CK, Saravanan S, Thomas DL, Sachdeva KS, Lucas GM, Mehta SH

Integrating HCV testing with HIV programs improves hepatitis C outcomes in people who inject drugs: A cluster-randomized trial

J Hepatol, 2019; : . 10.1016/j.jhep.2019.09.022
Tsang TK, Lee KH, Foxman B, Balmaseda A, Gresh L, Sanchez N, Ojeda S, Lopez R, Yang Y, Kuan G, Gordon

Association between the respiratory microbiome and susceptibility to influenza virus infection

Clin Infect Dis, 2019; : pii: ciz96. 10.1093/cid/ciz968
Lee KH, Foxman B, Kuan G, López R, Shedden K, Ng S, Balmaseda A, Gordon A

The respiratory microbiota: associations with influenza symptomatology and viral shedding

Ann Epidemiol, 2019; 37: 51-56.e6. 10.1016/j.annepidem.2019.07.013
Akhtar M, Kraemer MUG, Gardner LM

A dynamic neural network model for predicting risk of Zika in real time

BMC Med, 2019; 17(1): 171. 10.1186/s12916-019-1389-3
Grubaugh ND, Saraf S, Gangavarapu K, Watts A, Tan AL, Oidtman RJ, Ladner JT, Oliveira G, Matteson NL, Kraemer MUG, Vogels CBF, Hentoff A, Bhatia D, Stanek D, Scott B, Landis V, Stryker I, Cone MR, Kopp EW 4th, Cannons AC, Heberlein-Larson L, White S, Gillis LD, Ricciardi MJ, Kwal J, Lichtenberger PK, Magnani DM, Watkins DI, Palacios G, Hamer DH; GeoSentinel Surveillance Network, Gardner LM, Perkins TA, Baele G, Khan K, Morrison A, Isern S, Michael SF, Andersen KG

Travel Surveillance and Genomics Uncover a Hidden Zika Outbreak during the Waning Epidemic.

Cell, 2019; 178(5): 1057-1071. 10.1016/j.cell.2019.07.018
Hajdu L, Bota A, Kresz M, Khani A, Gardner L

Discovering the Hidden Community Structure of Public Transportation Networks

Netw Spat Econ, 2019; : . 10.1007/s11067-019-09476-3
Shoghri AE, Liebig J, Gardner L, Jurdak R, Kanhere S.

How Mobility Patterns Drive Disease Spread: A Case Study Using Public Transit Passenger Card Travel Data

IEEE World of Wireless, Mobile and Multimedia Networks (WoWMoM) Conference Proceedings, 2019; : . 10.1109/WoWMoM.2019.8793018
Hast M, Searle KM, Chaponda M, Lupiya J, Lubinda J, Sikalima J, Kobayashi T, Shields T, Mulenga M, Lessler J

The use of GPS data loggers to describe the impact of spatio-temporal movement patterns on malaria control in a high-transmission area of northern Zambia

Int J Health Geogr, 2019; 18(1): 19. 10.1186/s12942-019-0183-y
Thompson RN, Stockwin JE, van Gaalen RD, Polonsky JA, Kamvar ZN, Demarsh PA, Dahlqwist E, Li S, Miguel E, Jombart T, Lessler J

Improved inference of time-varying reproduction numbers during infectious disease outbreaks

Epidemics, 2019; : 100356. 10.1016/j.epidem.2019.100356
Shannon K, Hast M, Azman AS,Legros D, McKay H, Lessler J

Cholera prevention and control in refugee settings: Successes and continued challenges

PLoS Negl Trop Dis, 2019; 13(6): e0007347. 10.1371/journal.pntd.0007347
Graham M, Winter AK, Ferrari M, Grenfell B, Moss WJ, Azman AS, Metcalf CJE, Lessler J

Measles and the canonical path to elimination

Science, 2019; 364(6440): 584-587. 10.1126/science.aau6299
Hast MA, Chaponda M, Muleba M, Kabuya JB, Lupiya J, Kobayashi T, Shields T, Lessler J, Mulenga M, Stevenson JC, Norris DE, Moss WJ

The impact of three years of targeted IRS with pirimiphos-methyl on malaria parasite prevalence in a high-transmission area of northern Zambia

Am J Epidemiol, 2019; : pii: kwz10. 10.1093/aje/kwz107
Hast MA, Stevenson JC, Muleba M, Chaponda M, Kabuya JB, Mulenga M, Lessler J, Shields T, Moss WJ, Norris DE

Risk Factors for Household Vector Abundance Using Indoor CDC Light Traps in a High Malaria Transmission Area of Northern Zambia

Am J Trop Med Hyg, 2019; 101(1): 126-136. 10.4269/ajtmh.18-0875
Utazi CE, Thorley J, Alegana VA, Ferrari MJ, Takahashi S, Metcalf CJE, Lessler J, Cutts FT, Tatem AJ

Mapping vaccination coverage to explore the effects of delivery mechanisms and inform vaccination strategies

Nat Commun, 2019; 10(1): 1633. 10.1038/s41467-019-09611-1
Goodman KE, Lessler J, Harris AD, Milstone AM, Tamma PD

A methodological comparison of risk scores versus decision trees for predicting drug-resistant infections: A case study using extended-spectrum beta-lactamase (ESBL) bacteremia

Infect Control Hosp Epidemiol, 2019; 40(4): 400-407. 10.1017/ice.2019.17
Haw DJ, Cummings DA, Lessler, J, Salje H, Read JM, Riley S

Differential mobility and local variation in infection attack rate

PLoS Comput Biol, 2019; 15(1): e1006600. 10.1371/journal.pcbi.1006600
Wallace M, Sharfstein JM, Kaminsky J, Lessler J

Comparison of US County-Level Public Health Performance Rankings With County Cluster and National Rankings: Assessment Based on Prevalence Rates of Smoking and Obesity and Motor Vehicle Crash Death Rates

JAMA Netw Open, 2019; 2(1): e186816. 10.1001/jamanetworkopen.2018.6816
Li X, Mukandavire C, Cucunubá ZM, Abbas K, Clapham HE, Jit M, Johnson HL, Papadopoulos T, Vynnycky E, Brisson M, Carter ED, Clark A, Villiers MJ, Eilertson K, Ferrari MJ, Gamkrelidze I, Gaythorpe K, Grassly NC, Hallett TB, Jackson ML, Jean K, Karachaliou A, Klepac P, Lessler J, Li X, SM, Nayagam S, Nguyen DM, Razavi H, Razavi-Shearer D, Resch S, Sanderson C, Sweet S, Sy S, Tam Y, Tanvir H, Tran QM, Trotter CL, Truelove S, Zandvoort K, Verguet S, Walker N, Winter A, Ferguson NM, Garske T

Estimating the health impact of vaccination against 10 pathogens in 98 low and middle income countries from 2000 to 2030

medRxiv, 2019; : 19004358. 10.1101/19004358
Truelove SA, Keegan LT, Moss WJ, Chaisson LH, Macher E, Azman AS, Lessler J

Clinical and Epidemiological Aspects of Diphtheria: A Systematic Review and Pooled Analysis

Clin Infect Dis, 2019; : . 10.1093/cid/ciz808
Kaminsky J, Keegan LT, Metcalf CJE, Lessler J

Perfect counterfactuals for epidemic simulations

Philos Trans R Soc Lond B Biol Sci, 2019; 374(1776): 20180279. 10.1098/rstb.2018.0279
Hay JA, Minter A, Kylie Ainslie K, Lessler J, Kucharski AJ, Riley S

Serosolver: an open source tool to infer epidemiological and immunological dynamics from serological data

bioRxiv, 2019; : 730069. 10.1101/730069
Azman AS, Moore SM, Lessler J.

Surveillance and the global fight against cholera: Setting priorities and tracking progress

Vaccine, 2019; : . 10.1016/j.vaccine.2019.06.037
Lee EC, Azman AS, Kaminsky J, Moore SM, McKay HS, Lessler J

The impact of geographic targeting of oral cholera vaccination in sub-Saharan Africa: a modeling study

bioRxiv, 2019; : . 10.1101/617076
Borchering RK, Huang A, Mier-y-Teran-Romero L, Rojas DP, Rodriguez-Barraquer I, Katzelnick LC, Martinez SD, King GD, Cinkovich SC, Lessler J, Cummings DAT

Dengue after Zika: characterizing impacts of Zika emergence on endemic dengue transmission

bioRxiv, 2019; : 567537. 10.1101/567537
Azman AS, Ciglenecki I, Wamala JF, Lynch J, Aggarwal R, Rahman M, Wong S, Serafini M, Moussa AM, Dalton HR, Shrestha A, Pant R, Peck R, Gurley ES.

Hepatitis E should be considered a neglected tropical disease

PLoS Negl Trop Dis, 2019; 13(7): e0007453. 10.1371/journal.pntd.0007453
Das P, Sazzad HMS, Aleem MA, Rahman MZ, Rahman M, Anthony SJ, Lipkin WI, Gurley ES, Luby SP, Openshaw JJ

Hospital-based zoonotic disease surveillance in Bangladesh: design, field data and difficulties

Philos Trans R Soc Lond B Biol Sci, 2019; 374(1782): 2019001. 10.1098/rstb.2019.0019
Hong H, Dowdy DW, Dooley KE, Francis HW, Budhathoki C, Han HR, Farley JE

Aminoglycoside-Induced Hearing Loss Among Patients Being Treated for Drug-Resistant Tuberculosis in South Africa: A Prediction Model

Clin Infect Dis, 2019; : pii: ciz28. 10.1093/cid/ciz289
Campbell JR, Dowdy D, Schwartzman K

Treatment of latent infection to achieve tuberculosis elimination in low-incidence countries

PLoS Med, 2019; 16(6): e1002824. 10.1371/journal.pmed.1002824
Tampi RP, Tembo T, Mukumba-Mwenechanya M, Sharma A, Dowdy DW, Holmes CB, Bolton-Moore C, Sikazwe I, Tucker A, Sohn H

Operational characteristics of antiretroviral therapy clinics in Zambia: a time and motion analysis

BMC Health Serv Res, 2019; 19(1): 244. 10.1186/s12913-019-4096-z
Hanrahan CF, Nonyane BAS, Mmolawa L, West NS, Siwelana T, Lebina L, Martinson N, Dowdy DW

Contact tracing versus facility-based screening for active TB case finding in rural South Africa: A pragmatic cluster-randomized trial (Kharitode TB)

PLoS Med, 2019; 16(4): e1002796. 10.1371/journal.pmed.1002796

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