Stebbins S, Cummings DA, Stark JH, Vukotich C, Mitruka K, Thompson W, Rinaldo C, Roth L, Wagner M, Wisniewski SR, Dato V, Eng H, Burke DS.

Reduction in the incidence of influenza A but not influenza B associated with use of hand sanitizer and cough hygiene in schools: a randomized controlled trial.

Pediatr Infect Dis J, 2011; 30: 921-6. 10.1097/INF.0b013e3182218656
Johansson MA, Hombach J, Cummings DA.

Models of the impact of dengue vaccines: a review of current research and potential approaches.

Vaccine, 2011; 29: 5860-8. 10.1016/j.vaccine.2011.06.042
Fraser C, Cummings DA, Klinkenberg D, Burke DS, Ferguson NM.

Influenza transmission in households during the 1918 pandemic.

Am J Epidemiol, 2011; 174: 505-14. 10.1093/aje/kwr122
van Panhuis WG, Luxemburger C, Pengsaa K, Limkittikul K, Sabchareon A, Lang J, Durbin AP, Cummings DA.

Decay and persistence of maternal dengue antibodies among infants in Bangkok.

Am J Trop Med Hyg, 2011; 85: 355-62. 10.4269/ajtmh.2011.11-0125
Lessler J, Cummings DA, Read JM, Wang S, Zhu H, Smith GJ, Guan Y, Jiang CQ, Riley S.

Location-specific patterns of exposure to recent pre-pandemic strains of influenza A in southern China.

Nat Commun, 2011; 2: 423. 10.1038/ncomms1432
Althouse BM, Ng YY, Cummings DA.

Prediction of dengue incidence using search query surveillance.

PLoS Negl Trop Dis, 2011; 5: e1258. 10.1371/journal.pntd.0001258
Lessler J, Metcalf CJ, Grais RF, Luquero FJ, Cummings DA, Grenfell BT.

Measuring the performance of vaccination programs using cross-sectional surveys: a likelihood framework and retrospective analysis.

PLoS Med, 2011; 8: e1001110. 10.1371/journal.pmed.1001110
Kiwanuka N, Robb M, Laeyendecker O, Kigozi G, Wabwire-Mangen F, Makumbi FE, Nalugoda F, Kagaayi J, Eller M, Eller LA, Serwadda D, Sewankambo NK, Reynolds SJ, Quinn TC, Gray RH, Wawer MJ, Whalen CC.

HIV-1 viral subtype differences in the rate of CD4+ T-cell decline among HIV seroincident antiretroviral naive persons in Rakai district, Uganda.

J Acquir Immune Defic Syndr, 2010; 54(2): 180-4. 10.1097/QAI.0b013e3181c98fc0
Hollingsworth TD, Laeyendecker O, Shirreff G, Donnelly CA, Serwadda D, Wawer MJ, Kiwanuka N, Nalugoda F, Collinson-Streng A, Ssempijja V, Hanage WP, Quinn TC, Gray RH, Fraser C

HIV-1 transmitting couples have similar viral load set-points in Rakai, Uganda.

PLoS Pathog, 2010; 6(5): e1000876. 10.1371/journal.ppat.1000876
Conroy SA, Laeyendecker O, Redd AD, Collinson-Streng A, Kong X, Makumbi F, Lutalo T, Sewankambo N, Kiwanuka N, Gray RH, Wawer MJ, Serwadda D, Quinn TC; Rakai Health Sciences Program.

Changes in the distribution of HIV type 1 subtypes D and A in Rakai District, Uganda between 1994 and 2002.

AIDS Res Hum Retroviruses, 2010; (10): 1087-91. 10.1089/aid.2010.0054
Lee BK, Lessler J, Stuart EA.

Improving propensity score weighting using machine learning.

Stat Med, 2010; 29: 337-46. 10.1002/sim.3782
Westreich D, Lessler J, Funk MJ.

Propensity score estimation: neural networks, support vector machines, decision trees CART, and meta-classifiers as alternatives to logistic regression.

J Clin Epidemiol, 2010; 63: 826-33. 10.1016/j.jclinepi.2009.11.020
Yang Y, Halloran ME, Daniels MJ, Longini IM Jr, Burke DS, Cummings DA.

Modeling Competing Infectious Pathogens from a Bayesian Perspective: Application to Influenza Studies with Incomplete Laboratory Results.

J Am Stat Assoc, 2010; 105: 1310-1322.. 10.1198/jasa.2010.ap09581
Solomon BD, Lacbawan F, Mercier S, Clegg NJ, Delgado MR, Rosenbaum K, Dubourg C, David V, Olney AH, Wehner LE, Hehr U, Bale S, Paulussen A, Smeets HJ, Hardisty E, Tylki-Szymanska A, Pronicka E, Clemens M, McPherson E, Hennekam RC, Hahn J, Stashinko E, et al.

Mutations in ZIC2 in human holoprosencephaly: description of a novel ZIC2 specific phenotype and comprehensive analysis of 157 individuals.

J Med Genet, 2010; 47: 513-24. 10.1136/jmg.2009.073049
Fried JR, Gibbons RV, Kalayanarooj S, Thomas SJ, Srikiatkhachorn A, Yoon IK, Jarman RG, Green S, Rothman AL, Cummings DA.

Serotype-specific differences in the risk of dengue hemorrhagic fever: an analysis of data collected in Bangkok, Thailand from 1994 to 2006.

PLoS Negl Trop Dis, 2010; 4: e617. 10.1371/journal.pntd.0000617
Solomon BD, Pineda-Alvarez DE, Raam MS, Cummings DA.

Evidence for inheritance in patients with VACTERL association.

Hum Genet, 2010; 127: 731-3. 10.1007/s00439-010-0814-7
Lessler J, Brookmeyer R, Reich NG, Nelson KE, Cummings DA, Perl TM.

Identifying the probable timing and setting of respiratory virus infections.

Infect Control Hosp Epidemiol, 2010; 31: 809-15. 10.1086/655023
van Panhuis WG, Gibbons RV, Endy TP, Rothman AL, Srikiatkhachorn A, Nisalak A, Burke DS, Cummings DA.

Inferring the serotype associated with dengue virus infections on the basis of pre- and postinfection neutralizing antibody titers.

J Infect Dis, 2010; 202: 1002-10. 10.1086/656141
Lessler J, dos Santos T, Aguilera X, Brookmeyer R; PAHO Influenza Technical Working Group, Cummings DA.

H1N1pdm in the Americas.

Epidemics, 2010; 2: 132-8. 10.1016/j.epidem.2010.07.001
Gray RR, Tatem AJ, Lamers S, Hou W, Laeyendecker O, Serwadda D, Sewankambo N, Gray RH, Wawer M, Quinn TC, Goodenow MM, Salemi M.

Spatial phylodynamics of HIV-1 epidemic emergence in east Africa.

AIDS, 2009; 23(14): F9-F17. 10.1097/QAD.0b013e32832faf61
Collinson-Streng AN, Redd AD, Sewankambo NK, Serwadda D, Rezapour M, Lamers SL, Gray RH, Wawer MJ, Quinn TC, Laeyendecker O.

Geographic HIV type 1 subtype distribution in Rakai district, Uganda.

AIDS Res Hum Retroviruses, 2009; 25(10): 1045-8. 10.1089/aid.2009.0127
Kiwanuka N, Laeyendecker O, Quinn TC, Wawer MJ, Shepherd J, Robb M, Kigozi G, Kagaayi J, Serwadda D, Makumbi FE, Reynolds SJ, Gray RH.

HIV-1 subtypes and differences in heterosexual HIV transmission among HIV-discordant couples in Rakai, Uganda.

AIDS, 2009; 23(18): 2479-84. 10.1097/QAD.0b013e328330cc08
Lessler J, Kaufman JH, Ford DA, Douglas JV.

The cost of simplifying air travel when modeling disease spread.

PLoS One, 2009; 4: e4403. 10.1371/journal.pone.0004403
Grabowski MK, Viscidi RP, Margolick JB, Jacobson LP, Shah KV.

Investigation of pre-diagnostic virological markers for progressive multifocal leukoencephalopathy in human immunodeficiency virus-infected patients.

J Med Virol, 2009; 81: 1140-50. 10.1002/jmv.21493
Lessler J, Reich NG, Brookmeyer R, Perl TM, Nelson KE, Cummings DA.

Incubation periods of acute respiratory viral infections: a systematic review.

Lancet Infect Dis, 2009; 9: 291-300. 10.1016/S1473-3099(09)70069-6
Reich NG, Lessler J, Cummings DA, Brookmeyer R.

Estimating incubation period distributions with coarse data.

Stat Med, 2009; 28: 2769-84. 10.1002/sim.3659
Cummings DA, Iamsirithaworn S, Lessler JT, McDermott A, Prasanthong R, Nisalak A, Jarman RG, Burke DS, Gibbons RV.

The impact of the demographic transition on dengue in Thailand: insights from a statistical analysis and mathematical modeling.

PLoS Med, 2009; 6: e1000139. 10.1371/journal.pmed.1000139
Lessler J, Reich NG, Cummings DA; New York City Department of Health and Mental Hygiene Swine Influenza Investigation Team, Nair HP, Jordan HT, Thompson N.

Outbreak of 2009 pandemic influenza A H1N1 at a New York City school.

N Engl J Med, 2009; 361: 2628-36. 10.1056/NEJMoa0906089
Laeyendecker O, Zhang GW, Quinn TC, Garten R, Ray SC, Lai S, Liu W, Chen J, Yu XF.

Molecular epidemiology of HIV-1 subtypes in southern China.

J Acquir Immune Defic Syndr, 2008; 38(3): 356-62.
Kiwanuka N, Laeyendecker O, Robb M, Kigozi G, Arroyo M, McCutchan F, Eller LA, Eller M, Makumbi F, Birx D, Wabwire-Mangen F, Serwadda D, Sewankambo NK, Quinn TC, Wawer M, Gray R.

Effect of human immunodeficiency virus Type 1 (HIV-1) subtype on disease progression in persons from Rakai, Uganda, with incident HIV-1 infection.

J Infect Dis, 2008; 197(5): 707-13. 10.1086/527416
Lee LC, Newschaffer CJ, Lessler JT, Lee BK, Shah R, Zimmerman AW.

Variation in season of birth in singleton and multiple births concordant for autism spectrum disorders.

Paediatr Perinat Epidemiol, 2008; 22: 172-9. 10.1111/j.1365-3016.2007.00919.x
Halloran ME, Ferguson NM, Eubank S, Longini IM Jr, Cummings DA, Lewis B, Xu S, Fraser C, Vullikanti A, Germann TC, Wagener D, Beckman R, Kadau K, Barrett C, Macken CA, Burke DS, Cooley P.

Modeling targeted layered containment of an influenza pandemic in the United States.

Proc Natl Acad Sci U S A, 2008; 105: 4639-44. 10.1073/pnas.0706849105
Epstein JM, Parker J, Cummings D, Hammond RA.

Coupled contagion dynamics of fear and disease: mathematical and computational explorations.

PLoS One, 2008; 3: e3955. 10.1371/journal.pone.0003955
Lessler J, Cummings DA, Fishman S, Vora A, Burke DS.

Transmissibility of swine flu at Fort Dix, 1976.

J R Soc Interface, 2007; 4: 755-62.. 10.1098/rsif.2007.0228
Lessler J, Brookmeyer R, Perl TM.

An evaluation of classification rules based on date of symptom onset to identify health-care associated infections.

Am J Epidemiol, 2007; 166: 1220-9. 10.1093/aje/kwm188
Longini IM Jr, Halloran ME, Nizam A, Yang Y, Xu S, Burke DS, Cummings DA, Epstein JM.

Containing a large bioterrorist smallpox attack: a computer simulation approach.

Int J Infect Dis, 2007; 11: 98-108. 10.1016/j.ijid.2006.03.002
Billings L, Schwartz IB, Shaw LB, McCrary M, Burke DS, Cummings DA.

Instabilities in multiserotype disease models with antibody-dependent enhancement.

J Theor Biol, 2007; 246: 18-27. 10.1016/j.jtbi.2006.12.023
Cummings DA, Moss WJ, Long K, Wiysonge CS, Muluh TJ, Kollo B, Nomo E, Wolfe ND, Burke DS.

Improved measles surveillance in Cameroon reveals two major dynamic patterns of incidence.

Int J Infect Dis, 2006; 10: 148-55. 10.1016/j.ijid.2004.10.010
Ferguson NM, Cummings DA, Fraser C, Cajka JC, Cooley PC, Burke DS.

Strategies for mitigating an influenza pandemic.

Nature, 2006; 442: 448-52. doi:10.1038/nature04795
Burke DS, Epstein JM, Cummings DA, Parker JI, Cline KC, Singa RM, Chakravarty S.

Individual-based computational modeling of smallpox epidemic control strategies.

Acad Emerg Med, 2006; 13: 1142-9.. 10.1197/j.aem.2006.07.017

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