Reiner RC Jr, Perkins TA, Barker CM, Niu T, Chaves LF, Ellis AM, George DB, Le Menach A, Pulliam JR, Bisanzio D, Buckee C, Chiyaka C, Cummings DA, Garcia AJ, Gatton ML, Gething PW, Hartley DM, Johnston G, Klein EY, Michael E, Lindsay SW, Lloyd AL, et al.

A systematic review of mathematical models of mosquito-borne pathogen transmission: 1970-2010.

J R Soc Interface, 2013; 10: 20120921. 10.1098/rsif.2012.0921
Mier-y-Teran-Romero L, Schwartz IB, Cummings DA.

Breaking the symmetry: immune enhancement increases persistence of dengue viruses in the presence of asymmetric transmission rates.

J Theor Biol, 2013; 332: 203-10. 10.1016/j.jtbi.2013.04.036
Meltzer AC, Pierce R, Cummings DA, Pines JM, May L, Smith MA, Marcotte J, McCarthy ML.

Rapid 13C Urea Breath Test to Identify Helicobacter pylori Infection in Emergency Department Patients with Upper Abdominal Pain.

West J Emerg Med, 2013; 14: 278-82. 10.5811/westjem.2012.12.15173
Blackwood JC, Cummings DA, Broutin H, Iamsirithaworn S, Rohani P.

Deciphering the impacts of vaccination and immunity on pertussis epidemiology in Thailand.

Proc Natl Acad Sci U S A, 2013; 110: 9595-600. 10.1073/pnas.1220908110
Assiri A, McGeer A, Perl TM, Price CS, Al Rabeeah AA, Cummings DA, Alabdullatif ZN, Assad M, Almulhim A, Makhdoom H, Madani H, Alhakeem R, Al-Tawfiq JA, Cotten M, Watson SJ, Kellam P, Zumla AI, Memish ZA; KSA MERS-CoV Investigation Team.

Hospital outbreak of Middle East respiratory syndrome coronavirus.

N Engl J Med, 2013; 369: 407-16. 10.1056/NEJMoa1306742
Reich NG, Shrestha S, King AA, Rohani P, Lessler J, Kalayanarooj S, Yoon IK, Gibbons RV, Burke DS, Cummings DA.

Interactions between serotypes of dengue highlight epidemiological impact of cross-immunity.

J R Soc Interface, 2013; 10: 20130414. 10.1098/rsif.2013.0414
Liu SH, Brotman RM, Zenilman JM, Gravitt PE, Cummings DA.

Menstrual cycle and detectable human papillomavirus in reproductive-age women: a time series study.

J Infect Dis, 2013; 208: 1404-15. 10.1093/infdis/jit337
Rodriguez-Barraquer I, Mier-y-Teran-Romero L, Burke DS, Cummings DA.

Challenges in the interpretation of dengue vaccine trial results.

PLoS Negl Trop Dis, 2013; 7: e2126. 10.1371/journal.pntd.0002126
Lee RM, Lessler J, Lee RA, Rudolph KE, Reich NG, Perl TM, Cummings DA.

Incubation periods of viral gastroenteritis: a systematic review.

BMC Infect Dis, 2013; 13: 446. 10.1186/1471-2334-13-446
Word DP, Young JK, Cummings DA, Iamsirithaworn S, Laird CD.

Interior-point methods for estimating seasonal parameters in discrete-time infectious disease models.

PLoS One, 2013; 8: e74208. 10.1371/journal.pone.0074208
Azman AS, Stark JH, Althouse BM, Vukotich CJ Jr, Stebbins S, Burke DS, Cummings DA.

Household transmission of influenza A and B in a school-based study of non-pharmaceutical interventions.

Epidemics, 2013; 5: 181-6. 10.1016/j.epidem.2013.09.001
van Panhuis WG, Grefenstette J, Jung SY, Chok NS, Cross A, Eng H, Lee BY, Zadorozhny V, Brown S, Cummings D, Burke DS.

Contagious diseases in the United States from 1888 to the present.

N Engl J Med, 2013; 369: 2152-8. 10.1056/NEJMms1215400
Laeyendecker O, Brookmeyer R, Oliver AE, Mullis CE, Eaton KP, Mueller AC, Jacobson LP, Margolick JB, Brown J, Rinaldo CR, Quinn TC, Eshleman SH; Multicenter Aids Cohort Study Macs.

Factors associated with incorrect identification of recent HIV infection using the BED capture immunoassay.

AIDS Res Hum Retroviruses, 2012; 28(8): 816-22. 10.1089/AID.2011.0258
Keating SM1, Hanson D, Lebedeva M, Laeyendecker O, Ali-Napo NL, Owen SM, Stramer SL, Moore RD, Norris PJ, Busch MP.

Lower-sensitivity and avidity modifications of the vitros anti-HIV 1+2 assay for detection of recent HIV infections and incidence estimation.

J Clin Microbiol, 2012; 50(12): 3968-76. 10.1128/JCM.01454-12
Ng OT, Eyzaguirre LM, Carr JK, Chew KK, Lin L, Chua A, Leo YS, Redd AD, Quinn TC, Laeyendecker O.

Identification of new CRF51_01B in Singapore using full genome analysis of three HIV type 1 isolates.

AIDS Res Hum Retroviruses, 2012; 28(5): 527-30. 10.1089/AID.2011.0177
Metcalf CJ, Lessler J, Klepac P, Cutts F, Grenfell BT.

Impact of birth rate, seasonality and transmission rate on minimum levels of coverage needed for rubella vaccination.

Epidemiol Infect, 2012; 140: 2290-301. 10.1017/S0950268812000131
Read JM, Edmunds WJ, Riley S, Lessler J, Cummings DA.

Close encounters of the infectious kind: methods to measure social mixing behaviour.

Epidemiol Infect, 2012; 140: 2117-30. 10.1017/S0950268812000842
Cutts FT, Metcalf CJ, Lessler J, Grenfell BT.

Rubella vaccination: must not be business as usual.

Lancet, 2012; 380: 217-8. 10.1016/S0140-6736(12)61215-X
Lessler J, Metcalf CJ, Grenfell BT.

Measurement of vaccine-derived immunity: how do we use all the data?

Expert Rev Vaccines, 2012; 11: 747-9. 10.1586/erv.12.47
Edlund S, Davis M, Douglas JV, Kershenbaum A, Waraporn N, Lessler J, Kaufman JH.

A global model of malaria climate sensitivity: comparing malaria response to historic climate data based on simulation and officially reported malaria incidence.

Malar J, 2012; 11: 331. 10.1186/1475-2875-11-331
Azman AS, Luquero FJ, Rodrigues A, Palma PP, Grais RF, Banga CN, Grenfell BT, Lessler J.

Urban cholera transmission hotspots and their implications for reactive vaccination: evidence from Bissau city, Guinea bissau.

PLoS Negl Trop Dis, 2012; 6: e1901. 10.1371/journal.pntd.0001901
Redd AD, Mullis CE, Serwadda D, Kong X, Martens C, Ricklefs SM, Tobian AA, Xiao C, Grabowski MK, Nalugoda F, Kigozi G, Laeyendecker O, Kagaayi J, Sewankambo N, Gray RH, Porcella SF, Wawer MJ, Quinn TC.

The rates of HIV superinfection and primary HIV incidence in a general population in Rakai, Uganda.

J Infect Dis, 2012; 206: 267-74. 10.1093/infdis/jis325
Redd AD, Collinson-Streng AN, Chatziandreou N, Mullis CE, Laeyendecker O, Martens C, Ricklefs S, Kiwanuka N, Nyein PH, Lutalo T, Grabowski MK, Kong X, Manucci J, Sewankambo N, Wawer MJ, Gray RH, Porcella SF, Fauci AS, Sagar M, Serwadda D, Quinn TC.

Previously transmitted HIV-1 strains are preferentially selected during subsequent sexual transmissions.

J Infect Dis, 2012; 206: 1433-42. 10.1093/infdis/jis503
Reich NG, Lessler J, Cummings DA, Brookmeyer R.

Estimating absolute and relative case fatality ratios from infectious disease surveillance data.

Biometrics, 2012; 68: 598-606. 10.1111/j.1541-0420.2011.01709.x
Word DP, Cummings DA, Burke DS, Iamsirithaworn S, Laird CD.

A nonlinear programming approach for estimation of transmission parameters in childhood infectious disease using a continuous time model.

J R Soc Interface, 2012; 9: 1983-97. 10.1098/rsif.2011.0829
Stark JH, Sharma R, Ostroff S, Cummings DA, Ermentrout B, Stebbins S, Burke DS, Wisniewski SR.

Local spatial and temporal processes of influenza in Pennsylvania, USA: 2003-2009.

PLoS One, 2012; 7: e34245. 10.1371/journal.pone.0034245
WHO-VMI Dengue Vaccine Modeling Group, Beatty M, Boni MF, Brown S, Buathong R, Burke D, Coudeville L, Cummings DA, Edelman R, Farrar J, Focks DA, Gomes MG, Guignard A, Halstead S, Hombach J, Knerer G, Koelle K, Lam FC, Lang J, Longini I, Medlock J, Namgyal P, et al.

Assessing the potential of a candidate dengue vaccine with mathematical modeling.

PLoS Negl Trop Dis, 2012; 6: e1450. 10.1371/journal.pntd.0001450
Salje H, Lessler J, Endy TP, Curriero FC, Gibbons RV, Nisalak A, Nimmannitya S, Kalayanarooj S, Jarman RG, Thomas SJ, Burke DS, Cummings DA.

Revealing the microscale spatial signature of dengue transmission and immunity in an urban population.

Proc Natl Acad Sci U S A, 2012; 109: 9535-8. 10.1073/pnas.1120621109
Burton J, Billings L, Cummings DA, Schwartz IB.

Disease persistence in epidemiological models: the interplay between vaccination and migration.

Math Biosci, 2012; 239: 91-6. 10.1016/j.mbs.2012.05.003
Lessler J, Riley S, Read JM, Wang S, Zhu H, Smith GJ, Guan Y, Jiang CQ, Cummings DA.

Evidence for antigenic seniority in influenza A H3N2 antibody responses in southern China.

PLoS Pathog, 2012; 8: e1002802. 10.1371/journal.ppat.1002802
Stark JH, Cummings DA, Ermentrout B, Ostroff S, Sharma R, Stebbins S, Burke DS, Wisniewski SR.

Local variations in spatial synchrony of influenza epidemics.

PLoS One, 2012; 7: e43528. 10.1371/journal.pone.0043528
Rainwater-Lovett K, Rodriguez-Barraquer I, Cummings DA, Lessler J.

Variation in dengue virus plaque reduction neutralization testing: systematic review and pooled analysis.

BMC Infect Dis, 2012; 12: 233. 10.1186/1471-2334-12-233
Althouse BM, Lessler J, Sall AA, Diallo M, Hanley KA, Watts DM, Weaver SC, Cummings DA.

Synchrony of sylvatic dengue isolations: a multi-host, multi-vector SIR model of dengue virus transmission in Senegal.

PLoS Negl Trop Dis, 2012; 6: e1928. 10.1371/journal.pntd.0001928
Taha TE, James MM, Hoover DR, Sun J, Laeyendecker O, Mullis CE, Kumwenda JJ, Lingappa JR, Auvert B, Morrison CS, Mofensen LM, Taylor A, Fowler MG, Kumenda NI, Eshleman SH.

Association of recent HIV infection and in-utero HIV-1 transmission.

AIDS, 2011; 25(11): 1357-64. 10.1097/QAD.0b013e3283489d45
Incidence Assay Critical Path Working Group.

More and better information to tackle HIV epidemics: towards improved HIV incidence assays.

PLoS Med, 2011; 8(6): 1001045. 10.1371/journal.pmed.1001045
Piwowar-Manning E, Fiamma A, Laeyendecker O, Kulich M, Donnell D, Szekeres G, Robins-Morris L, Mullis CE, Vallari A, Hackett J Jr, Mastro TD, Gray G, Richter L, Alexandre MW, Chariyalertsak S, Chingono A, Sweat M, Coates T, Eshleman SH.

HIV surveillance in a large, community-based study: results from the pilot study of Project Accept (HIV Prevention Trials Network 043).

BMC Infect Dis, 2011; 11: 251. 10.1186/1471-2334-11-251
Laeyendecker O, Latimore A, Eshleman SH, Summerton J, Oliver AE, Gamiel J, Dobbs T, Mei J, Murphy G, Parry JV, Owen SM, Quinn TC.

The effect of sample handling on cross sectional HIV incidence testing results.

PLoS One, 2011; 6(10): e25899. 10.1371/journal.pone.0025899
Cousins MM, Laeyendecker O, Beauchamp G, Brookmeyer R, Towler WI, Hudelson SE, Khaki L, Koblin B, Chesney M, Moore RD, Kelen GD, Coates T, Celum C, Buchbinder SP, Seage GR 3rd, Quinn TC, Donnell D, Eshleman SH.

Use of a high resolution melting (HRM) assay to compare gag, pol, and env diversity in adults with different stages of HIV infection.

PLoS One, 2011; 6(11): e27211. 10.1371/journal.pone.0027211
Ng OT, Munshaw S, Lamers SL, Chew KK, Lin L, Redd AD, Manucci J, Quinn TC, Ray SC, Chua A, Leo YS, Laeyendecker O.

Molecular epidemiology of HIV type 1 in Singapore and identification of novel CRF01_AE/B recombinant forms.

AIDS Res Hum Retroviruses, 2011; (10): 1135-7. 10.1089/AID.2010.0364
Ng OT, Lin L, Laeyendecker O, Quinn TC, Sun YJ, Lee CC, Leo YS.

Increased rate of CD4+ T-cell decline and faster time to antiretroviral therapy in HIV-1 subtype CRF01_AE infected seroconverters in Singapore.

PLoS One, 2011; 6(1): e15738. 10.1371/journal.pone.0015738

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