Kiwanuka N, Laeyendecker O, Quinn TC, Wawer MJ, Shepherd J, Robb M, Kigozi G, Kagaayi J, Serwadda D, Makumbi FE, Reynolds SJ, Gray RH.

HIV-1 subtypes and differences in heterosexual HIV transmission among HIV-discordant couples in Rakai, Uganda.

AIDS, 2009; 23(18): 2479-84. 10.1097/QAD.0b013e328330cc08
Lessler J, Kaufman JH, Ford DA, Douglas JV.

The cost of simplifying air travel when modeling disease spread.

PLoS One, 2009; 4: e4403. 10.1371/journal.pone.0004403
Grabowski MK, Viscidi RP, Margolick JB, Jacobson LP, Shah KV.

Investigation of pre-diagnostic virological markers for progressive multifocal leukoencephalopathy in human immunodeficiency virus-infected patients.

J Med Virol, 2009; 81: 1140-50. 10.1002/jmv.21493
Lessler J, Reich NG, Brookmeyer R, Perl TM, Nelson KE, Cummings DA.

Incubation periods of acute respiratory viral infections: a systematic review.

Lancet Infect Dis, 2009; 9: 291-300. 10.1016/S1473-3099(09)70069-6
Reich NG, Lessler J, Cummings DA, Brookmeyer R.

Estimating incubation period distributions with coarse data.

Stat Med, 2009; 28: 2769-84. 10.1002/sim.3659
Cummings DA, Iamsirithaworn S, Lessler JT, McDermott A, Prasanthong R, Nisalak A, Jarman RG, Burke DS, Gibbons RV.

The impact of the demographic transition on dengue in Thailand: insights from a statistical analysis and mathematical modeling.

PLoS Med, 2009; 6: e1000139. 10.1371/journal.pmed.1000139
Lessler J, Reich NG, Cummings DA; New York City Department of Health and Mental Hygiene Swine Influenza Investigation Team, Nair HP, Jordan HT, Thompson N.

Outbreak of 2009 pandemic influenza A H1N1 at a New York City school.

N Engl J Med, 2009; 361: 2628-36. 10.1056/NEJMoa0906089
Laeyendecker O, Zhang GW, Quinn TC, Garten R, Ray SC, Lai S, Liu W, Chen J, Yu XF.

Molecular epidemiology of HIV-1 subtypes in southern China.

J Acquir Immune Defic Syndr, 2008; 38(3): 356-62.
Kiwanuka N, Laeyendecker O, Robb M, Kigozi G, Arroyo M, McCutchan F, Eller LA, Eller M, Makumbi F, Birx D, Wabwire-Mangen F, Serwadda D, Sewankambo NK, Quinn TC, Wawer M, Gray R.

Effect of human immunodeficiency virus Type 1 (HIV-1) subtype on disease progression in persons from Rakai, Uganda, with incident HIV-1 infection.

J Infect Dis, 2008; 197(5): 707-13. 10.1086/527416
Lee LC, Newschaffer CJ, Lessler JT, Lee BK, Shah R, Zimmerman AW.

Variation in season of birth in singleton and multiple births concordant for autism spectrum disorders.

Paediatr Perinat Epidemiol, 2008; 22: 172-9. 10.1111/j.1365-3016.2007.00919.x
Halloran ME, Ferguson NM, Eubank S, Longini IM Jr, Cummings DA, Lewis B, Xu S, Fraser C, Vullikanti A, Germann TC, Wagener D, Beckman R, Kadau K, Barrett C, Macken CA, Burke DS, Cooley P.

Modeling targeted layered containment of an influenza pandemic in the United States.

Proc Natl Acad Sci U S A, 2008; 105: 4639-44. 10.1073/pnas.0706849105
Epstein JM, Parker J, Cummings D, Hammond RA.

Coupled contagion dynamics of fear and disease: mathematical and computational explorations.

PLoS One, 2008; 3: e3955. 10.1371/journal.pone.0003955
Lessler J, Cummings DA, Fishman S, Vora A, Burke DS.

Transmissibility of swine flu at Fort Dix, 1976.

J R Soc Interface, 2007; 4: 755-62.. 10.1098/rsif.2007.0228
Lessler J, Brookmeyer R, Perl TM.

An evaluation of classification rules based on date of symptom onset to identify health-care associated infections.

Am J Epidemiol, 2007; 166: 1220-9. 10.1093/aje/kwm188
Longini IM Jr, Halloran ME, Nizam A, Yang Y, Xu S, Burke DS, Cummings DA, Epstein JM.

Containing a large bioterrorist smallpox attack: a computer simulation approach.

Int J Infect Dis, 2007; 11: 98-108. 10.1016/j.ijid.2006.03.002
Billings L, Schwartz IB, Shaw LB, McCrary M, Burke DS, Cummings DA.

Instabilities in multiserotype disease models with antibody-dependent enhancement.

J Theor Biol, 2007; 246: 18-27. 10.1016/j.jtbi.2006.12.023
Cummings DA, Moss WJ, Long K, Wiysonge CS, Muluh TJ, Kollo B, Nomo E, Wolfe ND, Burke DS.

Improved measles surveillance in Cameroon reveals two major dynamic patterns of incidence.

Int J Infect Dis, 2006; 10: 148-55. 10.1016/j.ijid.2004.10.010
Ferguson NM, Cummings DA, Fraser C, Cajka JC, Cooley PC, Burke DS.

Strategies for mitigating an influenza pandemic.

Nature, 2006; 442: 448-52. doi:10.1038/nature04795
Burke DS, Epstein JM, Cummings DA, Parker JI, Cline KC, Singa RM, Chakravarty S.

Individual-based computational modeling of smallpox epidemic control strategies.

Acad Emerg Med, 2006; 13: 1142-9.. 10.1197/j.aem.2006.07.017
Ferguson NM, Cummings DA, Cauchemez S, Fraser C, Riley S, Meeyai A, Iamsirithaworn S, Burke DS.

Strategies for containing an emerging influenza pandemic in Southeast Asia.

Nature, 2005; 437: 209-14. doi:10.1038/nature04017
Cummings DA, Schwartz IB, Billings L, Shaw LB, Burke DS.

Dynamic effects of antibody-dependent enhancement on the fitness of viruses.

Proc Natl Acad Sci U S A, 2005; 102: 15259-64. 10.1073/pnas.0507320102
Longini IM Jr, Nizam A, Xu S, Ungchusak K, Hanshaoworakul W, Cummings DA, Halloran ME.

Containing pandemic influenza at the source.

Science, 2005; 309: 1083-7. 10.1126/science.1115717
Schwartz IB, Shaw LB, Cummings DA, Billings L, McCrary M, Burke DS.

Chaotic desynchronization of multistrain diseases.

Phys Rev E Stat Nonlin Soft Matter Phys, 2005; 72: 066201. 10.1103/PhysRevE.72.066201
Cummings DA, Irizarry RA, Huang NE, Endy TP, Nisalak A, Ungchusak K, Burke DS.

Travelling waves in the occurrence of dengue haemorrhagic fever in Thailand.

Nature, 2004; 427: 344-7.. 10.1038/nature02225

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