Taha TE, James MM, Hoover DR, Sun J, Laeyendecker O, Mullis CE, Kumwenda JJ, Lingappa JR, Auvert B, Morrison CS, Mofensen LM, Taylor A, Fowler MG, Kumenda NI, Eshleman SH.

Association of recent HIV infection and in-utero HIV-1 transmission.

AIDS, 2011; 25(11): 1357-64. 10.1097/QAD.0b013e3283489d45
Incidence Assay Critical Path Working Group.

More and better information to tackle HIV epidemics: towards improved HIV incidence assays.

PLoS Med, 2011; 8(6): 1001045. 10.1371/journal.pmed.1001045
Piwowar-Manning E, Fiamma A, Laeyendecker O, Kulich M, Donnell D, Szekeres G, Robins-Morris L, Mullis CE, Vallari A, Hackett J Jr, Mastro TD, Gray G, Richter L, Alexandre MW, Chariyalertsak S, Chingono A, Sweat M, Coates T, Eshleman SH.

HIV surveillance in a large, community-based study: results from the pilot study of Project Accept (HIV Prevention Trials Network 043).

BMC Infect Dis, 2011; 11: 251. 10.1186/1471-2334-11-251
Laeyendecker O, Latimore A, Eshleman SH, Summerton J, Oliver AE, Gamiel J, Dobbs T, Mei J, Murphy G, Parry JV, Owen SM, Quinn TC.

The effect of sample handling on cross sectional HIV incidence testing results.

PLoS One, 2011; 6(10): e25899. 10.1371/journal.pone.0025899
Cousins MM, Laeyendecker O, Beauchamp G, Brookmeyer R, Towler WI, Hudelson SE, Khaki L, Koblin B, Chesney M, Moore RD, Kelen GD, Coates T, Celum C, Buchbinder SP, Seage GR 3rd, Quinn TC, Donnell D, Eshleman SH.

Use of a high resolution melting (HRM) assay to compare gag, pol, and env diversity in adults with different stages of HIV infection.

PLoS One, 2011; 6(11): e27211. 10.1371/journal.pone.0027211
Ng OT, Munshaw S, Lamers SL, Chew KK, Lin L, Redd AD, Manucci J, Quinn TC, Ray SC, Chua A, Leo YS, Laeyendecker O.

Molecular epidemiology of HIV type 1 in Singapore and identification of novel CRF01_AE/B recombinant forms.

AIDS Res Hum Retroviruses, 2011; (10): 1135-7. 10.1089/AID.2010.0364
Ng OT, Lin L, Laeyendecker O, Quinn TC, Sun YJ, Lee CC, Leo YS.

Increased rate of CD4+ T-cell decline and faster time to antiretroviral therapy in HIV-1 subtype CRF01_AE infected seroconverters in Singapore.

PLoS One, 2011; 6(1): e15738. 10.1371/journal.pone.0015738
Shirreff G, Pellis L, Laeyendecker O, Fraser C.

Transmission selects for HIV-1 strains of intermediate virulence: a modelling approach.

PLoS Comput Biol, 2011; 7(10): e1002185. 10.1371/journal.pcbi.1002185
Lee BK, Lessler J, Stuart EA.

Weight trimming and propensity score weighting.

PLoS One, 2011; 6: e18174. 10.1371/journal.pone.0018174
Kucirka LM, Grams ME, Lessler J, Hall EC, James N, Massie AB, Montgomery RA, Segev DL.

Association of race and age with survival among patients undergoing dialysis.

JAMA, 2011; 306: 620-6. 10.1001/jama.2011.1127
Edlund S, Kaufman J, Lessler J, Douglas J, Bromberg M, Kaufman Z, Bassal R, Chodick G, Marom R, Shalev V, Mesika Y, Ram R, Leventhal A.

Comparing three basic models for seasonal influenza.

Epidemics, 2011; 3: 135-42. 10.1016/j.epidem.2011.04.002
Sonthichai C, Iamsirithaworn S, Cummings D, Shokekird P, Niramitsantipong A, Khumket S, Chittaganpitch M, Lessler J.

Effectiveness of Non-pharmaceutical Interventions in Controlling an Influenza A Outbreak in a School, Thailand, November 2007.

Outbreak Surveill Investig Rep, 2011; 4: 611..
Rainwater-Lovett K, Moss WJ.

Immunologic basis for revaccination of HIV-infected children receiving HAART.

Future Virol, 2011; 6: 59-71.. 10.2217/fvl.10.75
Reich NG, Lessler J, Chu H, Cole SR.

Identification of the asymptomatic ratio.

Epidemiology, 2011; 22: 333-5. 10.1097/EDE.0b013e31821092b1
Lessler J, Moss WJ, Lowther SA, Cummings DA.

Maintaining high rates of measles immunization in Africa.

Epidemiol Infect, 2011; 139: 1039-49. 10.1017/S0950268810002232
Rodriguez-Barraquer I, Cordeiro MT, Braga C, de Souza WV, Marques ET, Cummings DA.

From re-emergence to hyperendemicity: the natural history of the dengue epidemic in Brazil.

PLoS Negl Trop Dis, 2011; 5: e935. 10.1371/journal.pntd.0000935
Stebbins S, Stark JH, Prasad R, Thompson WW, Mitruka K, Rinaldo C, Vukotich CJ Jr, Cummings DA.

Sensitivity and specificity of rapid influenza testing of children in a community setting.

Influenza Other Respir Viruses, 2011; 5: 104-9. 10.1111/j.1750-2659.2010.00171.x
Lee BY, Connor DL, Kitchen SB, Bacon KM, Shah M, Brown ST, Bailey RR, Laosiritaworn Y, Burke DS, Cummings DA.

Economic value of dengue vaccine in Thailand.

Am J Trop Med Hyg, 2011; 84: 764-72. 10.4269/ajtmh.2011.10-0624
Reich NG, Perl TM, Cummings DA, Lessler J.

Visualizing clinical evidence: citation networks for the incubation periods of respiratory viral infections.

PLoS One, 2011; 6: e19496. 10.1371/journal.pone.0019496
Stebbins S, Cummings DA, Stark JH, Vukotich C, Mitruka K, Thompson W, Rinaldo C, Roth L, Wagner M, Wisniewski SR, Dato V, Eng H, Burke DS.

Reduction in the incidence of influenza A but not influenza B associated with use of hand sanitizer and cough hygiene in schools: a randomized controlled trial.

Pediatr Infect Dis J, 2011; 30: 921-6. 10.1097/INF.0b013e3182218656
Johansson MA, Hombach J, Cummings DA.

Models of the impact of dengue vaccines: a review of current research and potential approaches.

Vaccine, 2011; 29: 5860-8. 10.1016/j.vaccine.2011.06.042
Fraser C, Cummings DA, Klinkenberg D, Burke DS, Ferguson NM.

Influenza transmission in households during the 1918 pandemic.

Am J Epidemiol, 2011; 174: 505-14. 10.1093/aje/kwr122
van Panhuis WG, Luxemburger C, Pengsaa K, Limkittikul K, Sabchareon A, Lang J, Durbin AP, Cummings DA.

Decay and persistence of maternal dengue antibodies among infants in Bangkok.

Am J Trop Med Hyg, 2011; 85: 355-62. 10.4269/ajtmh.2011.11-0125
Lessler J, Cummings DA, Read JM, Wang S, Zhu H, Smith GJ, Guan Y, Jiang CQ, Riley S.

Location-specific patterns of exposure to recent pre-pandemic strains of influenza A in southern China.

Nat Commun, 2011; 2: 423. 10.1038/ncomms1432
Althouse BM, Ng YY, Cummings DA.

Prediction of dengue incidence using search query surveillance.

PLoS Negl Trop Dis, 2011; 5: e1258. 10.1371/journal.pntd.0001258
Lessler J, Metcalf CJ, Grais RF, Luquero FJ, Cummings DA, Grenfell BT.

Measuring the performance of vaccination programs using cross-sectional surveys: a likelihood framework and retrospective analysis.

PLoS Med, 2011; 8: e1001110. 10.1371/journal.pmed.1001110
Kiwanuka N, Robb M, Laeyendecker O, Kigozi G, Wabwire-Mangen F, Makumbi FE, Nalugoda F, Kagaayi J, Eller M, Eller LA, Serwadda D, Sewankambo NK, Reynolds SJ, Quinn TC, Gray RH, Wawer MJ, Whalen CC.

HIV-1 viral subtype differences in the rate of CD4+ T-cell decline among HIV seroincident antiretroviral naive persons in Rakai district, Uganda.

J Acquir Immune Defic Syndr, 2010; 54(2): 180-4. 10.1097/QAI.0b013e3181c98fc0
Hollingsworth TD, Laeyendecker O, Shirreff G, Donnelly CA, Serwadda D, Wawer MJ, Kiwanuka N, Nalugoda F, Collinson-Streng A, Ssempijja V, Hanage WP, Quinn TC, Gray RH, Fraser C

HIV-1 transmitting couples have similar viral load set-points in Rakai, Uganda.

PLoS Pathog, 2010; 6(5): e1000876. 10.1371/journal.ppat.1000876
Conroy SA, Laeyendecker O, Redd AD, Collinson-Streng A, Kong X, Makumbi F, Lutalo T, Sewankambo N, Kiwanuka N, Gray RH, Wawer MJ, Serwadda D, Quinn TC; Rakai Health Sciences Program.

Changes in the distribution of HIV type 1 subtypes D and A in Rakai District, Uganda between 1994 and 2002.

AIDS Res Hum Retroviruses, 2010; (10): 1087-91. 10.1089/aid.2010.0054
Lee BK, Lessler J, Stuart EA.

Improving propensity score weighting using machine learning.

Stat Med, 2010; 29: 337-46. 10.1002/sim.3782
Westreich D, Lessler J, Funk MJ.

Propensity score estimation: neural networks, support vector machines, decision trees CART, and meta-classifiers as alternatives to logistic regression.

J Clin Epidemiol, 2010; 63: 826-33. 10.1016/j.jclinepi.2009.11.020
Yang Y, Halloran ME, Daniels MJ, Longini IM Jr, Burke DS, Cummings DA.

Modeling Competing Infectious Pathogens from a Bayesian Perspective: Application to Influenza Studies with Incomplete Laboratory Results.

J Am Stat Assoc, 2010; 105: 1310-1322.. 10.1198/jasa.2010.ap09581
Solomon BD, Lacbawan F, Mercier S, Clegg NJ, Delgado MR, Rosenbaum K, Dubourg C, David V, Olney AH, Wehner LE, Hehr U, Bale S, Paulussen A, Smeets HJ, Hardisty E, Tylki-Szymanska A, Pronicka E, Clemens M, McPherson E, Hennekam RC, Hahn J, Stashinko E, et al.

Mutations in ZIC2 in human holoprosencephaly: description of a novel ZIC2 specific phenotype and comprehensive analysis of 157 individuals.

J Med Genet, 2010; 47: 513-24. 10.1136/jmg.2009.073049
Fried JR, Gibbons RV, Kalayanarooj S, Thomas SJ, Srikiatkhachorn A, Yoon IK, Jarman RG, Green S, Rothman AL, Cummings DA.

Serotype-specific differences in the risk of dengue hemorrhagic fever: an analysis of data collected in Bangkok, Thailand from 1994 to 2006.

PLoS Negl Trop Dis, 2010; 4: e617. 10.1371/journal.pntd.0000617
Solomon BD, Pineda-Alvarez DE, Raam MS, Cummings DA.

Evidence for inheritance in patients with VACTERL association.

Hum Genet, 2010; 127: 731-3. 10.1007/s00439-010-0814-7
Lessler J, Brookmeyer R, Reich NG, Nelson KE, Cummings DA, Perl TM.

Identifying the probable timing and setting of respiratory virus infections.

Infect Control Hosp Epidemiol, 2010; 31: 809-15. 10.1086/655023
van Panhuis WG, Gibbons RV, Endy TP, Rothman AL, Srikiatkhachorn A, Nisalak A, Burke DS, Cummings DA.

Inferring the serotype associated with dengue virus infections on the basis of pre- and postinfection neutralizing antibody titers.

J Infect Dis, 2010; 202: 1002-10. 10.1086/656141
Lessler J, dos Santos T, Aguilera X, Brookmeyer R; PAHO Influenza Technical Working Group, Cummings DA.

H1N1pdm in the Americas.

Epidemics, 2010; 2: 132-8. 10.1016/j.epidem.2010.07.001
Gray RR, Tatem AJ, Lamers S, Hou W, Laeyendecker O, Serwadda D, Sewankambo N, Gray RH, Wawer M, Quinn TC, Goodenow MM, Salemi M.

Spatial phylodynamics of HIV-1 epidemic emergence in east Africa.

AIDS, 2009; 23(14): F9-F17. 10.1097/QAD.0b013e32832faf61
Collinson-Streng AN, Redd AD, Sewankambo NK, Serwadda D, Rezapour M, Lamers SL, Gray RH, Wawer MJ, Quinn TC, Laeyendecker O.

Geographic HIV type 1 subtype distribution in Rakai district, Uganda.

AIDS Res Hum Retroviruses, 2009; 25(10): 1045-8. 10.1089/aid.2009.0127