Publications

Winter AK, Hegde ST

The important role of serology for COVID-19 control

Lancet Infect Dis, 2020; 20(7): 758-759. 10.1016/S1473-3099(20)30322-4

Khan AI, Rashid MM, Islam MT, Afrad MH, Salimuzzaman M, Hegde ST, Zion MMI, Khan ZH, Shirin T, Habib ZH, Khan IA, Begum YA, Azman AS, Rahman M, Clemens JD, Flora MS, Qadri F

Epidemiology of Cholera in Bangladesh: Findings From Nationwide Hospital-based Surveillance, 2014-2018

Clin Infect Dis, 2020; 71(7): 1635-1642. 10.1093/cid/ciz1075

Azman AS, Lauer SA, Bhuiyan TR, Luquero FJ, Leung DT, Hegde ST, Harris JB, Paul KK, Khaton F, Ferdous J, Lessler J, Salje H, Qadri F, Gurley ES

Vibrio Cholerae O1 Transmission in Bangladesh: Insights from a Nationally Representative Serosurvey

Lancet Microbe, 2020; 1(8): E336-E343. 10.1016/s2666-5247(20)30141-5

Becker AD, Grantz KH, Hegde ST, Bérubé S, Cummings DAT, Amy Wesolowski A

Development and Dissemination of Infectious Disease Dynamic Transmission Models during the COVID-19 Pandemic: What Can We Learn from Other Pathogens and How Can We Move Forward?

Lancet Digit Health, 2020; : s2589-7500. 10.1016/s2589-7500(20)30268-5

Thielen P, Wohl S, Mehoke T, Ramakrishnan S, Kirsche M, Falade-Nwulia O, Trovão NS, Ernlund A, Howser C, Sadowski N, Morris P, Hopkins M, Schwartz M, Fan Y, Gniazdowski V, Lessler J, Sauer L, Schatz MC, Evans JD, Ray SC, Timp W, Mostafa HH

Genomic Diversity of SARS-CoV-2 During Early Introduction into the United States National Capital Region

MedRxiv, 2020; : . 10.1101/2020.08.13.20174136

Ekeng E, Tchatchouang S, Akenji B, Boubacar B, Akintayo I, Chukwu C, Dan Dano I, Melingui S, Ousmane S, Popoola MO, Nzouankeu A, Boum Y, Luquero FJ, Ahumibe A, Naidoo D, Azman AS, Lessler J, Wohl S

Persistence of the T12 Vibrio cholerae O1 lineage in West Africa: Insights from a Regional Sequencing Workshop

MedRxiv, 2020; : . 10.1101/2020.09.24.20199026

Gniazdowski V, Morris CP, Wohl S, Mehoke T, Ramakrishnan S, Peter Thielen P, Powell H, Smith B, Armstrong DT, Herrera M, Reifsnyder C, Sevdali M, Carroll KC, Pekosz A, Mostafa HH

Repeat COVID-19 Molecular Testing: Correlation of SARS-CoV-2 Culture with Molecular Assays and Cycle Thresholds

Clin. Infect. Dis., 2020; : ciaa1616. 10.1093/cid/ciaa1616

Iyer AS, Jones FK, Nodoushani A, Kellya M, Becker M, Slater D, Mills R, Teng E, Kamruzzaman M, Garcia-Beltran WF, Astudillo M, Diane Yang D, Miller TE, Olivera E, Fischinger S, Atyeo C, Iafrate AJ, Calderwood SB, Lauer SA, Yu J, Li Z, Feldman J, Hauser BM, Caradonna TM, Branda JA, Turbett SE, LaRocque RC, Mellon G, Barouch DH, Schmidt AG, Azman AS, Alter G, Ryan ET, Harris JB, Charles RC

Persistence and decay of human antibody responses to the receptor binding domain of SARS-CoV-2 spike protein in COVID-19 patients

Sci. Immunol, 2020; 5(52): eabe0367. 10.1126/sciimmunol.abe0367

Razafimahatratra SL, Wesolowski A, Rafetrarivony L, Heraud JM, Jones FK, Cauchemez S, Razafindratsimandresy R, Raharinantoanina SJ, Harimanana A, Collard JM, Metcalf CJE

Seroprevalence of pertussis in Madagascar and implications for vaccination

Epidemiol. Infect, 2020; 148: e283. 10.1017/S0950268820002800

Jones FK, Wamala JF, Rumunu J, Mawien PN, Kol MT, Wohl S, Deng L, Pezzoli L, Omar LH, Lessler J, Quilici M, Luquero FJ, Azman AS

Successive epidemic waves of cholera in South Sudan between 2014 and 2017: a descriptive epidemiological study

Lancet Planet Health, 2020; 4(12): e577–87. 10.1016/S2542-5196(20)30255-2

Rader B, Scarpino SV, Nande A, Hill AL, Adlam B, Reiner RC, Pigott DM, Gutierrez B, Zarebski AE, Shrestha M, Brownstein JS, Castro MC, Dye C, Tian H, Pybus OG, Kraemer MUG

Crowding and the shape of COVID-19 epidemics

Nat Med, 2020; : . 10.1038/s41591-020-1104-0

Bing A, Hu Y, Prague M, Hill AL, Li JZ, Bosch RJ, DeGruttola V, Wang R

Comparison of empirical and dynamic models for HIV viral load rebound after treatment interruption

Stat Commun Infect Dis, 2020; : e1948-4690. 10.1515/scid-2019-0021

Krieger MS, Denison CE, Anderson TL, Nowak MA, Hill AL

Population structure across scales facilitates coexistence and spatial heterogeneity of antibiotic-resistant infections

PLoS Comput. Biol, 2020; 16(7): e1008010. 10.1371/journal.pcbi.1008010

Sheen J, Nande A, Walters EL, Adlam B, Gheorghe A, Shinnick J, Tejeda MF, Greenlee AJ, Schneider D, Hill AL, Levy MZ

The effect of eviction moratoriums on the transmission of SARS-CoV-2

medRxiv, 2020; : . 10.1101/2020.10.27.20220897

Nande A, Adlam B, Sheen J, Levy MZ, Hill AL

Dynamics of COVID-19 under social distancing measures are driven by transmission network structure

medRxiv, 2020; : . 10.1101/2020.06.04.20121673

Lee EC, Wada NI, Grabowski MK, Gurley ES, Lessler J

The engines of SARS-CoV-2 spread

Science, 2020; 370 (6515): 406-407. 10.1126/science.abd8755

Eshleman SH, Piwowar-Manning E, Wilson EA, Lennon D, Fogel JM, Agyei Y, Sullivan PA, Weng L, Moore A, Laeyendecker O, Kosloff B, Bwalya J, Maarman G, van Deventer A, Floyd S, Bock P, Ayles H, Fidler S, Hayes R, Donnell D; HPTN 071 (PopART) Study Team

Determination of HIV status and identification of incident HIV infections in a large, community-randomized trial: HPTN 071 (PopART)

J Int AIDS Soc, 2020; 23(2): e25452. 10.1002/jia2.25452

Redd AD, Doria-Rose NA, Weiner JA, Nason M, Seivers M, Schmidt SD, Laeyendecker O, Martens C, Bruno D, Keele BF, Raju N, Georgiev IS, Lamers SL, Astemborski J, Kirk GD, Mascola JR, Ackerman ME, Mehta SH, Quinn TC

Longitudinal Antibody Responses in People Who Inject Drugs Infected With Similar Human Immunodeficiency Virus Strains

J Infect Dis, 2020; 221(5): 756-765. 10.1093/infdis/jiz503

Boon D, Bruce V, Patel EU, Quinn J, Srikrishnan AK, Shanmugam S, Iqbal S, Balakrishnan P, Sievers M, Kirk GD, Thomas DL, Quinn TC, Cox AL, Page KA, Solomon SS, Mehta SH, Laeyendecker O

Antibody avidity-based approach to estimate population-level incidence of hepatitis C

J Hepatol, 2020; 73(2): 294-302. 10.1016/j.jhep.2020.03.028

Klock E, Mwinnya G, Eller LA, Fernandez RE, Kibuuka H, Nitayaphan S, Kosgei J, Moore RD, Robb M, Eshleman SH, Laeyendecker O

Impact of Early Antiretroviral Treatment Initiation on Performance of Cross-Sectional Incidence Assays

AIDS Res Hum Retroviruses, 2020; 36(7): 583-589. 10.1089/AID.2019.0286

Lamers SL, Rose R, Cross S, Rodriguez CW, Redd AD, Quinn TC, Serwadda D, Kagaayi J, Kigozi G, Galiwango R, Gray RH, Grabowski MK, Laeyendecker O

HIV-1 Subtype Distribution and Diversity Over 18 Years in Rakai, Uganda

AIDS Res Hum Retroviruses, 2020; 36(6): 522-526. 10.1089/aid.2020.0062

Klein SL, Pekosz A, Park HS, Ursin RL, Shapiro JR, Benner SE, Littlefield K, Kumar S, Naik HM, Betenbaugh M, Shrestha R, Wu AA, Hughes RM, Burgess I, Caturegli P, Laeyendecker O, Quinn TC, Sullivan DJ, Shoham S, Redd AD, Bloch EM, Casadevall A, Tobian AAR

Sex, age, and hospitalization drive antibody responses in a COVID-19 convalescent plasma donor population

J Clin Invest, 2020; : . 10.1172/JCI142004

Rose R, Cross S, Lamers SL, Astemborski J, Kirk GD, Mehta SH, Sievers M, Martens C, Bruno D, Redd AD, Laeyendecker O.

Persistence of HIV transmission clusters among people who inject drugs

AIDS, 2020; : . 10.1097/QAD.0000000000002662

Mwinnyaa G, Grabowski MK, Gray RH, Wawer M, Chang LW, Ssekasanvu J, Kagaayi J, Kigozi G, Kalibbala S, Galiwango RM, Ndyanabo A, Serwadda D, Quinn TC, Reynolds SJ, Laeyendecker O

HIV serologically indeterminate individuals: Future HIV status and risk factors

PLoS One, 2020; 15(8): e0237633. 10.1371/journal.pone.0237633

Benner SE, Patel EU, Laeyendecker O, Pekosz A, Littlefield K, Eby Y, Fernandez RE, Miller J, Kirby CS, Keruly M, Klock E, Baker OR, Schmidt HA, Shrestha R, Burgess I, Bonny TS, Clarke W, Caturegli P, Sullivan D, Shoham S, Quinn TC, Bloch EM, Casadevall A, Tobian AAR, Redd AD

SARS-CoV-2 Antibody Avidity Responses in COVID-19 Patients and Convalescent Plasma Donors

J Infect Dis, 2020; : . 10.1093/infdis/jiaa581

Woldemeskel BA, Kwaa AK, Garliss CC, Laeyendecker O, Ray SC, Blankson JN

Healthy donor T-cell responses to common cold coronaviruses and SARS-CoV-2

J Clin Invest, 2020; : . 10.1172/JCI143120

Shrock E, Fujimura E, Kula T, Timms RT, Lee I, Leng Y, Robinson ML, Sie BM, Li MZ, Chen Y, Logue J, Zuiani A, McCulloch D, Lelis FJN, Stephanie Henson S, Monaco DR, Travers M, Habibi S, Clarke WA, Caturegli P, Laeyendecker O, Piechocka-Trocha A, Li J, Khatri A, Chu HY, MGH COVID-19 Collection & Processing Team; Villani A, Kays K, Goldberg MB, Hacohen N, Filbin MR, Yu XG, Walker BD, Wesemann DR, Larman HB, Lederer JA, Elledge SJ

Viral epitope profiling of COVID-19 patients reveals cross-reactivity and correlates of severity

Science, 2020; : . 10.1126/science.abd4250

Lee EC, Chao DL, Lemaitre JC, Matrajt L, Pasetto D, Perez-Saez J, Finger F, Rinaldo A, Sugimoto JD, Halloran ME, Longini Jr IM, Ternier R, Vissieres K, Azman AS, Lessler J, Ivers LC

Achieving coordinated national immunity and cholera elimination in Haiti through vaccination: a modelling study

Lancet Glob Health, 2020; 8 (7): e1081–89. 10.1016/S2214-109X(20)30310-7

Zheng Q, Jones FK, Leavitt SV, Ung L, Labrique AB, Peters DH, Lee EC, Azman AS

HIT-COVID, a global database tracking public health interventions to COVID-19

Sci. Data, 2020; 7: 286. 10.1038/s41597-020-00610-2

Grantz KH, Lee EC, McGowan LD, Lee KH, Metcalf CJE, Gurley ES, Lessler J

Maximizing and evaluating the impact of test-trace-isolate programs

MedRxiv, 2020; : . 10.1101/2020.09.02.20186916

Wohl S, Giles JR, Lessler J

Sample Size Calculation for Phylogenetic Case Linkage

MedRxiv, 2020; : . 10.1101/2020.07.10.20150920

Giles JR, zu Erbach-Schoenberg E, Tatem AJ, Gardner L, Bjørnstad ON, Metcalf CJE, Wesolowski A

The duration of travel impacts the spatial dynamics of infectious diseases

Proc Natl Acad Sci U S A, 2020; 117(36): 22572-225. 10.1073/pnas.1922663117

Chowdhury S, Azziz-Baumgartner E, Kile JC, Hoque M, Rahman MZ, Hossain M, Ghosh PK, Ahmed SSU, Kennedy ED, Sturm-Ramirez K, Gurley ES

Association of Biosecurity and Hygiene Practices with Environmental Contamination with Influenza A Viruses in Live Bird Markets, Bangladesh

Emerg Infect Dis, 2020; 26(9): 2087-2096. 10.3201/eid2609.191029

Paul KK, Sazzad HMS, Rahman M, Sultana S, Hossain MJ, Ledermann JP, Burns P, Friedman MS, Flora MS, Fischer M, Hills S, Luby SP, Gurley ES

Hospital-based surveillance for Japanese encephalitis in Bangladesh, 2007–2016: Implications for introduction of immunization

Int J Infect Dis, 2020; 99: 69-74. 10.1016/j.ijid.2020.07.026

Taylor AW, Blau DM, Bassat Q, Onyango D, Kotloff KL, Arifeen SE, Mandomando I, Chawana R, Baillie VL, Akelo V, Tapia MD, Salzberg NT, Keita AM, Morris T, Nair S, Assefa N, Seale AC, Scott JAG, Kaiser R, Jambai A, Barr BAT, Gurley ES, Ordi J, Zaki SR, Sow SO, Islam F, Rahman A, Dowell SF, Koplan JP, Raghunathan PL, Madhi SA, Breiman RF

Initial findings from a novel population-based child mortality surveillance approach: a descriptive study

Lancet Glob Health, 2020; 8 (7): e909-e919. 10.1016/S2214-109X(20)30205-9

Paul KK, Salje H, Rahman MW, Rahman M, Gurley ES

Comparing insights from clinic-based versus community-based outbreak investigations: a case study of chikungunya in Bangladesh

Int J Infect Dis, 2020; 97: 306-312. 10.1016/j.ijid.2020.05.111

Gurley ES, Spiropoulou CF, de Wit E

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